<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10010" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2014-07-20</depositionDate>
            <releaseDate>2014-09-07</releaseDate>
            <updateDate>2014-09-07</updateDate>
        </keyDates>
        <title>Full virus map of Brome Mosaic Virus (micrographs and particle coordinates)</title>
        <correspondingAuthor private="true">
            <firstName>Zhao</firstName>
            <lastName>Wang</lastName>
            <organization type="academic">National Center for Macromolecular Imaging, Baylor College of Medicine</organization>
            <townOrCity>Houston</townOrCity>
            <country>United States</country>
            <postOrZipCode>77030</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <firstName>Wah</firstName>
            <lastName>Chiu</lastName>
            <organization type="academic">National Center for Macromolecular Imaging, Baylor College of Medicine</organization>
            <townOrCity>Houston</townOrCity>
            <country>United States</country>
            <postOrZipCode>77030</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Wang Z</author>
            <author>Hryc C</author>
            <author>Bammes B</author>
            <author>Afonine P</author>
            <author>Jakana J</author>
            <author>Chen DH</author>
            <author>Liu XA</author>
            <author>Baker M</author>
            <author>Kao C</author>
            <author>Ludtke S</author>
            <author>Schmid M</author>
            <author>Adams P</author>
            <author>Chiu W</author>
        </authorsList>
        <versionHistory>
            <version>
                <versionNumber>1</versionNumber>
                <date>2015-09-25</date>
                <statusCode>REL</statusCode>
                <details>Added dark and gain correction images:
dark_frame.tif
gain_frame.tif</details>
            </version>
            <version>
                <versionNumber>2</versionNumber>
                <date>2015-11-11</date>
                <statusCode>REL</statusCode>
                <details>New gain corrected images uploaded.
Directory organization changed</details>
            </version>
        </versionHistory>
        <datasetSize units="TB">1.7</datasetSize>
        <entryDOI>10.6019/EMPIAR-10010</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-6000</emdbEntry>
        </relatedEMDBEntries>
        <citationList/>
    </crossReferences>
    <imageSet>
        <name>Brome Mosaic Virus micrographs - non gain corrected</name>
        <directory>/data/micrographs/non_gain_corrected</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>424</numImagesOrTiltSeries>
        <framesPerImage>37</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>37</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.99</pixelWidth>
            <imageHeight>3072</imageHeight>
            <pixelHeight>0.99</pixelHeight>
        </dimensions>
        <details>Each frame is an individual TIFF image. The FinalImage.tif included for each micrograph is a sum image of the frames without drift correction and damage compensation. The .box files (found in the directory data/micrographs/non_gain_corrected/box_files)describe particle locations but are rotated 90 degrees relative to the micrograph frames.
The dark and gain correction images are found in data/micrographs/non_gain_corrected/gain_correction and are called:
dark_frame.tif
gain_frame.tif
Dataset is related to EMPIAR-10011.
This set is a subset of the images in data/micrographs/gain_corrected which were actually used in the final reconstruction.</details>
        <segmentationList/>
    </imageSet>
    <imageSet>
        <name>Brome Mosaic Virus micrographs - gain corrected</name>
        <directory>/data/micrographs/gain_corrected</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>647</numImagesOrTiltSeries>
        <framesPerImage>37</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>37</frameRangeMax>
        </frameRange>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.99</pixelWidth>
            <imageHeight>3072</imageHeight>
            <pixelHeight>0.99</pixelHeight>
        </dimensions>
        <details>These images have been gain corrected and are in MRC format. This is the full set of images collected for the project and includes those that were not finally used for image processing. data/micrographs/non_gain_corrected contains only the subset used in the reconstruction.</details>
        <segmentationList/>
    </imageSet>
</entry>
