<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10070" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2016-11-16</depositionDate>
            <releaseDate>2016-11-18</releaseDate>
            <updateDate>2023-07-07</updateDate>
        </keyDates>
        <title>Focused Ion Beam-Scanning Electron Microscopy of mitochondrial reticulum in murine skeletal muscle</title>
        <correspondingAuthor private="true">
            <firstName>Sriram</firstName>
            <lastName>Subramaniam</lastName>
            <organization type="academic">National Cancer Institute</organization>
            <townOrCity>Bethesda</townOrCity>
            <country>United States</country>
            <postOrZipCode>20892</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <firstName>Sriram</firstName>
            <lastName>Subramaniam</lastName>
            <organization type="academic">National Institutes of Health, NCI, Center for Cancer Research, Laboratory of Cell Biology</organization>
            <townOrCity>Bethesda</townOrCity>
            <country>United States</country>
            <postOrZipCode>20892</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <firstName>Robert</firstName>
            <lastName>Balaban</lastName>
            <organization type="academic">National Institutes of Health, NHLBI</organization>
            <townOrCity>Bethesda</townOrCity>
            <country>United States</country>
            <postOrZipCode>20892</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Glancy B</author>
            <author>Hartnell LM</author>
            <author>Malide D</author>
            <author>Yu ZX</author>
            <author>Combs CA</author>
            <author>Connelly PS</author>
            <author>Subramaniam S</author>
            <author>Balaban RS</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">1.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-10070</entryDOI>
        <experimentType>FIB-SEM</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Glancy B</author>
                    <author order="2">Hartnell LM</author>
                    <author order="3">Malide D</author>
                    <author order="4">Yu ZX</author>
                    <author order="5">Combs CA</author>
                    <author order="6">Connelly PS</author>
                    <author order="7">Subramaniam S</author>
                    <author order="8">Balaban RS</author>
                    <title>Mitochondrial reticulum for cellular energy distribution in muscle</title>
                    <journal>Nature</journal>
                    <journalAbbreviation>Nature</journalAbbreviation>
                    <country></country>
                    <issue>7562</issue>
                    <volume>523</volume>
                    <firstPage>617</firstPage>
                    <lastPage>620</lastPage>
                    <year>2015</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/nature14614</externalReferences>
                    <externalReferences type="pubmed">26223627</externalReferences>
                    <details>The included aligned mrc was used to provide the measured dimensions of individual mitochondria. This is a representative demonstration of the distribution of the mitochondrial reticulum through a paravascular region of murine skeletal muscle.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>aligned stack: FIB-SEM volume through skeletal muscle tissue</name>
        <directory>/data</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>291</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>1675</imageWidth>
            <pixelWidth>50.0</pixelWidth>
            <imageHeight>1595</imageHeight>
            <pixelHeight>50.0</pixelHeight>
        </dimensions>
        <details>MRC is of an aligned stack of tiffs that are binned by 3 in x and y. Z thickness is ~15 nm.

Volume rendered components found in Figures 1 (paravascular region in murine skeletal muscle) and Figure 2 (skeletal muscle mitochondria morphologies, nucleus, and blood vessel), Glancy et al: http://www.nature.com/nature/journal/v523/n7562/pdf/nature14614.pdf are located in respective Figure folders. Software used for rendering/segmentation: ImageJ/TRAKEM2 plugin.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
