<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10231" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2018-12-06</depositionDate>
            <releaseDate>2019-06-07</releaseDate>
            <updateDate>2019-06-07</updateDate>
        </keyDates>
        <title>Scanning electron diffraction data collected from peptide microcrystals</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-4227-917X</authorORCID>
            <firstName>Marcus</firstName>
            <lastName>Gallagher-Jones</lastName>
            <organization type="academic">Department of Chemistry and Biochemistry, University of California Los Angeles</organization>
            <street>611 Charles E. Young Dr. East</street>
            <townOrCity>Los Angeles</townOrCity>
            <stateOrProvince>CA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>90095</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-0248-4964</authorORCID>
            <firstName>Jose</firstName>
            <middleName>A</middleName>
            <lastName>Rodriguez</lastName>
            <organization type="academic">Department of Chemistry and Biochemistry, University of California Los Angeles</organization>
            <street>611 Charles E. Young Dr. East</street>
            <townOrCity>Los Angeles</townOrCity>
            <stateOrProvince>CA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>90095</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-4227-917X">Gallagher-Jones M</author>
            <author authorORCID="0000-0002-0248-4964">Rodriguez JA</author>
            <author>Bustillo K</author>
            <author>Ophus C</author>
        </authorsList>
        <datasetSize units="GB">144.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-10231</entryDOI>
        <experimentType>IHM</experimentType>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-4227-917X" order="1">Gallagher-Jones M</author>
                    <author order="2">Ophus C</author>
                    <author order="3">Bustillo KC</author>
                    <author order="4">Boyer DR</author>
                    <author order="5">Panova O</author>
                    <author order="6">Glynn C</author>
                    <author order="7">Zee CT</author>
                    <author order="8">Ciston J</author>
                    <author order="9">Mancia KC</author>
                    <author order="10">Minor AM</author>
                    <author order="11">Rodriguez JA</author>
                    <title>Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction</title>
                    <journal>Communications biology</journal>
                    <journalAbbreviation>Commun Biol</journalAbbreviation>
                    <country>United Kingdom</country>
                    <volume>2</volume>
                    <year>2019</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s42003-018-0263-8</externalReferences>
                    <externalReferences type="pubmed">30675524</externalReferences>
                    <details>The micrographs are scanning diffraction data collected on TEAM1 microscope at Lawrence Berkeley National Lab using a K2 direct electron detector. Each data set represents a 4 dimensional stack of data where the first 2 dimensions are the detector dimensions and the second two are the scan dimensions in real space.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Scanning Diffraction data from QYNNQNNFV peptide microcrystals</name>
        <directory>/data</directory>
        <category>micrographs - single frame</category>
        <headerFormat>DM4</headerFormat>
        <dataFormat>DM4</dataFormat>
        <numImagesOrTiltSeries>30000</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>SIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>1792</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>1920</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>Each .dm4 file contains a 4D stack of data with the following dimensions: 1792,1920,scanX,scanY 
where the first two dimensions are the detector dimensions and the second two correspond to a real space scan. Each diffraction pattern corresponds to a single 2.5 ms exposure with a total accumulated dose of 1 electron per squared Angstrom.
Software for opening the files and analyzing the image data can be found at:
https://github.com/marcusgj13/4DSTEM_dataAnalysis</details>
        <segmentationList/>
        <micrographsFilePattern>data/MGJ QYN9*.dm4</micrographsFilePattern>
        <pickedParticlesFilePattern>data/</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/</pickedParticlesDirectory>
    </imageSet>
</entry>
