<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10711" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-05-11</depositionDate>
            <releaseDate>2022-06-14</releaseDate>
            <updateDate>2022-06-14</updateDate>
        </keyDates>
        <title>Transmission electron micrographs of mouse RNF213 in a chemically-stabilized complex with human UBE2L3</title>
        <correspondingAuthor>
            <authorORCID>0000-0003-0293-1063</authorORCID>
            <firstName>Juraj</firstName>
            <lastName>Ahel</lastName>
            <organization type="academic">IMP Vienna</organization>
            <street>Campus-Vienna-Biocenter 1</street>
            <townOrCity>Vienna</townOrCity>
            <stateOrProvince>Vienna</stateOrProvince>
            <country>Austria</country>
            <postOrZipCode>1030</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0003-1582-6924</authorORCID>
            <firstName>Tim</firstName>
            <lastName>Clausen</lastName>
            <organization type="academic">IMP Vienna</organization>
            <townOrCity>Vienna</townOrCity>
            <country>Austria</country>
            <postOrZipCode>1030</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-0293-1063">Ahel J</author>
            <author authorORCID="0000-0002-8137-3532">Weis F</author>
            <author authorORCID="0000-0003-1582-6924">Clausen T</author>
        </authorsList>
        <datasetSize units="TB">2.1</datasetSize>
        <entryDOI>10.6019/EMPIAR-10711</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-12931</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="true">
                    <author authorORCID="0000-0003-0293-1063" order="1">Ahel J</author>
                    <author authorORCID="0000-0003-1582-6924" order="2">Clausen T</author>
                    <author authorORCID="0000-0002-7052-9802" order="3">Virdee S</author>
                    <author authorORCID="0000-0003-1742-6588" order="4">Fletcher AJ</author>
                    <author authorORCID="0000-0003-0216-7085" order="5">Grabarczyk DB</author>
                    <author order="6">Deszcz L</author>
                    <author order="7">Lehner A</author>
                    <author authorORCID="0000-0002-3405-7801" order="8">Roitinger E</author>
                    <title>E3 ubiquitin ligase RNF213 employs a non-canonical zinc finger active site and is allosterically regulated by ATP</title>
                    <journal>BiorXiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>unaligned multi-frame micrographs</name>
        <directory>/data/raw_micrographs</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>4591</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>40</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.536</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.536</pixelHeight>
        </dimensions>
        <details>Contents are as follows:
raw_micrographs/ == unaligned multi-frame micrographs, not gain-corrected
 == 
201216_struct_A_GainRef.mrc == gain reference for the dataset
micrographs_ctf.star == relion 3.1 star file describing the gain-corrected dose-weighed motion-corrected micrographs
micrographs_ctf_motioncorr/ == gain-corrected dose-weighed motion-corrected micrographs
micrographs_ctf_motioncorr_metadata/ == metadata of the motion correction step
 == 
cryolo_PhosaurusNet_RNF213_config.h5 == cryolo network model used for initial particles picking
cryolo_PhosaurusNet_RNF213_config.json == config file for the cryolo network model used for initial particles picking
coordinates_initial_cryolo/ == particle coordinates picked by cryolo
coordinates_final_refined/ == particle coordinates for the particles used in the final reconstruction
particles/ == particles used in the final reconstruction, Bayesian-polished by relion 3.1
refined_particles.star == relion 3.1 star file describing the particles after the final reconstruction, including angular assignment
 == 
mtf_k3_standard_300kV_FL2.star == MTF file used for MTF correction for this dataset</details>
        <segmentationList/>
        <micrographsFilePattern>data/micrographs_ctf_motioncorr/*mrc</micrographsFilePattern>
        <pickedParticlesFilePattern>data/refined_particles.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/particles</pickedParticlesDirectory>
    </imageSet>
</entry>
