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        <keyDates>
            <depositionDate>2021-07-14</depositionDate>
            <releaseDate>2021-11-01</releaseDate>
            <updateDate>2021-11-01</updateDate>
        </keyDates>
        <title>electron cryo-tomograms of axons from human cerebral organoids, expressing L1CAM-GFP</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-2778-3936</authorORCID>
            <firstName>Wanda</firstName>
            <lastName>Kukulski</lastName>
            <organization type="academic">University of Bern, Institute of Biochemistry and Molecular Medicine</organization>
            <street>Bühlstrasse 28</street>
            <townOrCity>Bern</townOrCity>
            <stateOrProvince>N/A</stateOrProvince>
            <country>Switzerland</country>
            <postOrZipCode>3011</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-2778-3936</authorORCID>
            <firstName>Wanda</firstName>
            <lastName>Kukulski</lastName>
            <organization type="academic">University of Bern, Institute of Biochemistry and Molecular Medicine</organization>
            <street>Bühlstrasse 28</street>
            <townOrCity>Bern</townOrCity>
            <stateOrProvince>N/A</stateOrProvince>
            <country>Switzerland</country>
            <postOrZipCode>3011</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator>
            <authorORCID>0000-0003-2324-8853</authorORCID>
            <firstName>Madeline</firstName>
            <middleName>A</middleName>
            <lastName>Lancaster</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Francis Crick Avenue</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-3421-6363">Hoffmann P</author>
            <author authorORCID="0000-0003-4235-8353">Giandomenico S</author>
            <author authorORCID="0000-0003-3221-2502">Ganeva I</author>
            <author authorORCID="0000-0001-9359-3287">Wozny M</author>
            <author>Sutcliffe M</author>
            <author authorORCID="0000-0003-2324-8853">Lancaster M</author>
            <author authorORCID="0000-0002-2778-3936">Kukulski W</author>
        </authorsList>
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        <entryDOI>10.6019/EMPIAR-10805</entryDOI>
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    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-13196</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-3421-6363" order="1">Hoffmann P</author>
                    <author authorORCID="0000-0003-4235-8353" order="2">Giandomenico S</author>
                    <author authorORCID="0000-0003-3221-2502" order="3">Ganeva I</author>
                    <author authorORCID="0000-0001-9359-3287" order="4">Wozny M</author>
                    <author order="5">Sutcliffe M</author>
                    <author authorORCID="0000-0003-2324-8853" order="6">Lancaster M</author>
                    <author authorORCID="0000-0002-2778-3936" order="7">Kukulski W</author>
                    <title>Electron cryo-tomography reveals the subcellular architecture of growing axons in human brain organoids</title>
                    <journal>eLife</journal>
                    <journalAbbreviation>Elife</journalAbbreviation>
                    <country></country>
                    <volume>10</volume>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.7554/eLife.70269</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>reconstructed electron tomographic volumes of axons from human cerebral organoids expressing L1CAM-GFP</name>
        <directory>/data/tomograms</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>8</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>SIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>1920</imageWidth>
            <pixelWidth>7.4</pixelWidth>
            <imageHeight>1854</imageHeight>
            <pixelHeight>7.4</pixelHeight>
        </dimensions>
        <details>Tomograms were reconstructed with IMOD using back projection with a SIRT-like filter from stacks aligned by patch tracking, binning 2.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>raw image frames of tilt series acquired on axons from human cerebral organoids expressing L1CAM-GFP</name>
        <directory>/data/raw_data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>8</numImagesOrTiltSeries>
        <framesPerImage>4</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>3.7</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>3.7</pixelHeight>
        </dimensions>
        <details>8 folders, each corresponding to one tilt series and containing raw image frames as well as metadata in an .mdoc file. The image frames are not aligned and not gain-corrected. An additional folder contains the gain reference and defect file.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
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