<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-10815" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2021-07-28</depositionDate>
            <releaseDate>2021-12-17</releaseDate>
            <updateDate>2021-12-17</updateDate>
        </keyDates>
        <title>Cryo electron tomograms of mouse DRG axons (dataset 1)</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-4691-5746</authorORCID>
            <firstName>Helen</firstName>
            <middleName>Elizabeth</middleName>
            <lastName>Foster</lastName>
            <organization type="academic">Human Technopole</organization>
            <street>Viale Rita Levi‑Montalcini, 1</street>
            <townOrCity>Milan</townOrCity>
            <country>Italy</country>
            <postOrZipCode>20157</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0001-7292-5430</authorORCID>
            <firstName>Andrew</firstName>
            <lastName>Carter</lastName>
            <organization type="academic">MRC Laboratory of Molecular Biology</organization>
            <street>Cambridge Biomedical Campus, Francis Crick Ave,</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QH</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-4691-5746">Foster HE</author>
            <author authorORCID="0000-0002-4406-5151">Ventura Santos C</author>
            <author authorORCID="0000-0001-7292-5430">Carter AP</author>
        </authorsList>
        <datasetSize>200.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-10815</entryDOI>
        <experimentType>EMDB</experimentType>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-13600</emdbEntry>
            <emdbEntry>EMD-13601</emdbEntry>
            <emdbEntry>EMD-13602</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-4691-5746" order="1">Foster HE</author>
                    <author authorORCID="0000-0002-4406-5151" order="2">Ventura Santos C</author>
                    <author authorORCID="0000-0001-7292-5430" order="3">Carter AP</author>
                    <title>A cryo-ET survey of microtubules and intracellular compartments in mammalian axons</title>
                    <journal>Journal of Cell Biology</journal>
                    <journalAbbreviation>J. Cell Biol.</journalAbbreviation>
                    <country>United Kingdom</country>
                    <issue>2</issue>
                    <volume>221</volume>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1083/jcb.202103154</externalReferences>
                    <externalReferences type="pubmed">34878519</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Tomograms of mouse dorsal root ganglion axons (dataset 1) binned by 4 and deconvolved</name>
        <directory>/data/bin4_deconvolved_tomos</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>30</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>927</imageWidth>
            <pixelWidth>13.76</pixelWidth>
            <imageHeight>927</imageHeight>
            <pixelHeight>13.76</pixelHeight>
        </dimensions>
        <details>Reconstructed bin4 tomograms. Volumes were filtered using the Wiener-like deconvolution filter implemented in WARP (Tegunov 2018, https://github.com/dtegunov/tom\_deconv). Tomograms were reconstructed in IMOD by weighted back projection.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Corrected, aligned, dose-filtered and order-sorted tilt series for mouse dorsal root ganglion axons (dataset 1)</name>
        <directory>/data/Dose-filt_stacks</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>30</numImagesOrTiltSeries>
        <framesPerImage>61</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>3.44</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>3.44</pixelHeight>
        </dimensions>
        <details>Corrected, aligned, dose-filtered and sorted tilt series. The tilt series were generated from the raw frame images by correction for gain, defects and motion. In addition, tilt images were dose-filtered. Gain-correction and defects files are provided in the Raw_frames folder. Motion-correction was performed with alignframes (IMOD) operated in subTOM.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
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