<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11198" schemaVersion="0.63" public="true">
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        <keyDates>
            <depositionDate>2022-09-01</depositionDate>
            <releaseDate>2023-10-03</releaseDate>
            <updateDate>2023-10-03</updateDate>
        </keyDates>
        <title>In situ cryo-electron tomography of E. amylovora cells infected by the jumbo bacteriophage RAY</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-8943-1330</authorORCID>
            <firstName>Thomas</firstName>
            <middleName>Gerard</middleName>
            <lastName>Laughlin</lastName>
            <organization type="academic">Department of Molecular Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA</organization>
            <townOrCity>San Diego</townOrCity>
            <stateOrProvince>California</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>92093</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-4677-9809</authorORCID>
            <firstName>Elizabeth</firstName>
            <lastName>Villa</lastName>
            <organization type="academic">Department of Molecular Biology, School of Biological Sciences, University of California San Diego, La Jolla, CA, USA; Howard Hughes Medical Institute, University of California San Diego, La Jolla, CA, USA</organization>
            <townOrCity>San Diego</townOrCity>
            <stateOrProvince>California</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>92093</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Prichard A</author>
            <author>Lee J</author>
            <author authorORCID="0000-0001-8943-1330">Laughlin TG</author>
            <author>Lee A</author>
            <author>Thomas KP</author>
            <author>Sy A</author>
            <author>Spencer T</author>
            <author>Asavavimol A</author>
            <author>Cafferata A</author>
            <author>Cameron M</author>
            <author>Chiu N</author>
            <author>Davydov D</author>
            <author>Desai I</author>
            <author>Diaz G</author>
            <author>Guereca M</author>
            <author>Hearst K</author>
            <author>Huang L</author>
            <author>Jacobs E</author>
            <author>Johnson A</author>
            <author>Kahn S</author>
            <author>Koch R</author>
            <author>Martinez A</author>
            <author>Norquist M</author>
            <author>Pau T</author>
            <author>Prasad G</author>
            <author>Saam K</author>
            <author>Sandhu M</author>
            <author>Sarabria AJ</author>
            <author>Schumaker S</author>
            <author>Sonin S</author>
            <author>Sonin A</author>
            <author>Uyeno A</author>
            <author>Zhao A</author>
            <author>Corbett K</author>
            <author>Pogliano K</author>
            <author>Meyer J</author>
            <author>Grose JH</author>
            <author authorORCID="0000-0003-4677-9809">Villa E</author>
            <author>Dutton R</author>
            <author>Pogliano J</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">244.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-11198</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>cell</scale>
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    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-27973</emdbEntry>
            <emdbEntry>EMD-27993</emdbEntry>
            <emdbEntry>EMD-28003</emdbEntry>
            <emdbEntry>EMD-28004</emdbEntry>
            <emdbEntry>EMD-28005</emdbEntry>
            <emdbEntry>EMD-28006</emdbEntry>
            <emdbEntry>EMD-28007</emdbEntry>
            <emdbEntry>EMD-28008</emdbEntry>
            <emdbEntry>EMD-28009</emdbEntry>
            <emdbEntry>EMD-28010</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Prichard A</author>
                    <author order="2">Lee J</author>
                    <author order="3">Laughlin TG</author>
                    <author order="4">Lee A</author>
                    <author order="5">Thomas KP</author>
                    <author order="6">Sy AE</author>
                    <author order="7">Spencer T</author>
                    <author order="8">Asavavimol A</author>
                    <author order="9">Cafferata A</author>
                    <author order="10">Cameron M</author>
                    <author order="11">Chiu N</author>
                    <author order="12">Davydov D</author>
                    <author order="13">Desai I</author>
                    <author order="14">Diaz G</author>
                    <author order="15">Guereca M</author>
                    <author order="16">Hearst K</author>
                    <author order="17">Huang L</author>
                    <author order="18">Jacobs E</author>
                    <author order="19">Johnson A</author>
                    <author order="20">Kahn S</author>
                    <author order="21">Koch R</author>
                    <author order="22">Martinez A</author>
                    <author order="23">Norquist M</author>
                    <author order="24">Pau T</author>
                    <author order="25">Prasad G</author>
                    <author order="26">Saam K</author>
                    <author order="27">Sandhu M</author>
                    <author order="28">Sarabia AJ</author>
                    <author order="29">Schumaker S</author>
                    <author order="30">Sonin A</author>
                    <author order="31">Uyeno A</author>
                    <author order="32">Zhao A</author>
                    <author order="33">Corbett KD</author>
                    <author order="34">Pogliano K</author>
                    <author order="35">Meyer J</author>
                    <author order="36">Grose JH</author>
                    <author order="37">Villa E</author>
                    <author order="38">Dutton R</author>
                    <author order="39">Pogliano J</author>
                    <title>Identifying the core genome of the nucleus-forming bacteriophage family and characterization of Erwinia phage RAY</title>
                    <journal>Cell reports</journal>
                    <journalAbbreviation>Cell Rep</journalAbbreviation>
                    <country></country>
                    <issue>5</issue>
                    <volume>42</volume>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.celrep.2023.112432</externalReferences>
                    <externalReferences type="pubmed">37120812</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned tilt-movie frames as non-normalized LZW-TIFF</name>
        <directory>/data/dataset_1/frames</directory>
        <category>tilt series</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>950</numImagesOrTiltSeries>
        <framesPerImage>10</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>4.265</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>4.265</pixelHeight>
        </dimensions>
        <details>Gain reference supplied in data/frames as MRC and requires a 270 CW rotation prior to application to TIFs. Fluence per tilt-movie is 2.19 electrons per square Angstrom. SerialEM metadata for 17 tilt-series is in data/frames/mdocs, Warp/M metadata in data/frames/</details>
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        <pickedParticlesFilePattern></pickedParticlesFilePattern>
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        <directory>/data/dataset_2/frames</directory>
        <category>tilt series</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>872</numImagesOrTiltSeries>
        <framesPerImage>12</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>4.265</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>4.265</pixelHeight>
        </dimensions>
        <details>Gain reference supplied in data/frames as MRC and requires a 270 CW rotation prior to application to TIFs. Fluence per tilt-movie is 2.62 electrons per square Angstrom. SerialEM metadata for 15 tilt-series is in data/frames/mdocs, Warp/M metadata in data/frames/</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
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