<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11336" schemaVersion="0.63" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2022-12-03</depositionDate>
            <releaseDate>2023-05-26</releaseDate>
            <updateDate>2023-10-09</updateDate>
        </keyDates>
        <title>Cryo-EM SPA datasets for Antibody 4-33 in complex with prefusion SARS-CoV-2 Spike glycoprotein (K3 movies/.tif files)</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-2910-0908</authorORCID>
            <firstName>Ryan</firstName>
            <middleName>Gavin</middleName>
            <lastName>Casner</lastName>
            <organization type="academic">Columbia University</organization>
            <street>3227 Broadway</street>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>NY</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10027</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-9943-8819</authorORCID>
            <firstName>Lawrence</firstName>
            <lastName>Shapiro</lastName>
            <organization type="academic">Department of Biochemistry, Columbia University</organization>
            <street>3227 Broadway</street>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>NY</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10027</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-2910-0908">Casner RG</author>
            <author>Reddem ER</author>
            <author authorORCID="0000-0001-9943-8819">Shapiro L</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">1.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-11336</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-26964</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Liu L</author>
                    <author authorORCID="0000-0002-2910-0908" order="2">Casner RG</author>
                    <author order="3">Guo Y</author>
                    <author order="4">Wang Q</author>
                    <author order="5">Iketani S</author>
                    <author order="6">Chan JF</author>
                    <author order="7">Yu J</author>
                    <author order="8">Dadonaite B</author>
                    <author order="9">Nair MS</author>
                    <author order="10">Mohri H</author>
                    <author order="11">Reddem ER</author>
                    <author order="12">Yuan S</author>
                    <author order="13">Poon VK</author>
                    <author order="14">Chan CC</author>
                    <author order="15">Yuen KY</author>
                    <author order="16">Sheng Z</author>
                    <author order="17">Huang Y</author>
                    <author order="18">Bloom JD</author>
                    <author authorORCID="0000-0001-9943-8819" order="19">Shapiro L</author>
                    <author order="20">Ho DD</author>
                    <title>Antibodies targeting a quaternary site on SARS-CoV-2 spike glycoprotein prevent viral receptor engagement by conformational locking</title>
                    <journal>Immunity</journal>
                    <journalAbbreviation>Immunity</journalAbbreviation>
                    <country></country>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.immuni.2023.09.003</externalReferences>
                    <externalReferences type="pubmed">37776849</externalReferences>
                    <details>Cryo-EM data for single particle analysis were collected at the Columbia Zuckerman Institute on a Titan Krios electron microscope operating at 300 kV, equipped with a Gatan K3-BioQuantum direct detection detector, using SerialEM. Exposures were taken at a magnification of 81,000x (pixel size of 1.07 Å), using a total electron fluence of 42 e-/Å2 fractionated over 60 frames with an exposure time of 3 s. A random defocus range of -0.8 to -2.0 µm was used.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>K3 Movies (.tif) for 4-33 Antibody + Spike</name>
        <directory>/data/4-33/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>6976</numImagesOrTiltSeries>
        <framesPerImage>60</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>1.07</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>1.07</pixelHeight>
        </dimensions>
        <details>Collected on the Columbia Zuckerman Institute Krios using K3-BioQuantum.
Dose: 16 e/pix/s, Pixel Size: 1.074 A/pix, Exposure time 3s, Frame time 0.05s, Total Dose 42e/A2</details>
        <segmentationList/>
        <micrographsFilePattern>data/4-33/movies/*.tif</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
