<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11393" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-01-15</depositionDate>
            <releaseDate>2023-02-22</releaseDate>
            <updateDate>2023-02-22</updateDate>
        </keyDates>
        <title>Electron cryo-tomography data of HeLa cells expressing untagged Cidec</title>
        <correspondingAuthor>
            <authorORCID>0000-0002-2778-3936</authorORCID>
            <firstName>Wanda</firstName>
            <lastName>Kukulski</lastName>
            <organization type="academic">University of Bern</organization>
            <townOrCity>Bern</townOrCity>
            <country>Switzerland</country>
            <postOrZipCode>3012</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator>
            <authorORCID>0000-0002-2778-3936</authorORCID>
            <firstName>Wanda</firstName>
            <lastName>Kukulski</lastName>
            <organization type="academic">University of Bern</organization>
            <townOrCity>Bern</townOrCity>
            <country>Switzerland</country>
            <postOrZipCode>3012</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator>
            <authorORCID>0000-0002-7857-7032</authorORCID>
            <firstName>David</firstName>
            <middleName>B</middleName>
            <lastName>Savage</lastName>
            <organization type="academic">Metabolic Research Laboratories, Wellcome Trust-Medical Research Council Institute of Metabolic Science, University of Cambridge</organization>
            <townOrCity>Cambridge</townOrCity>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 0QQ</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Ganeva I</author>
            <author>Lim K</author>
            <author>Boulanger J</author>
            <author>Hoffmann PC</author>
            <author>Muriel O</author>
            <author>Borgeaud AC</author>
            <author>Hagen WJH</author>
            <author>Savage DB</author>
            <author>Kukulski W</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize>42.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-11393</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-16454</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="false">
                    <author order="1">Ganeva I</author>
                    <author order="2">Lim K</author>
                    <author order="3">Boulanger J</author>
                    <author order="4">Hoffmann PC</author>
                    <author order="5">Muriel O</author>
                    <author order="6">Borgeaud AC</author>
                    <author order="7">Hagen WJH</author>
                    <author order="8">Savage DB</author>
                    <author order="9">Kukulski W</author>
                    <title>The architecture of Cidec-mediated interfaces between lipid droplets</title>
                    <journal>Cell Reports</journal>
                    <journalAbbreviation>Cell Rep.</journalAbbreviation>
                    <country></country>
                    <volume>42</volume>
                    <year>2023</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1016/j.celrep.2023.112107</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned tilt series or dose-fractionated tilt images acquired on cryo-FIB milled HeLa cells expressing untagged Cidec</name>
        <directory>/data/RawData</directory>
        <category>tilt series</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>7</numImagesOrTiltSeries>
        <framesPerImage>3</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3838</imageWidth>
            <pixelWidth>3.5</pixelWidth>
            <imageHeight>3710</imageHeight>
            <pixelHeight>3.5</pixelHeight>
        </dimensions>
        <details>Each subdirectory contains the raw data that was used for reconstruction of one electron cryo-tomogram. In six cases, the raw data is the unaligned series of tilt images. In one case, the raw data are three dose-fractionated frames per tilt image. The sample are cryo-FIB milled HeLa cells expressing untagged Cidec.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Reconstructed electron cryo-tomograms of cryo-FIB milled HeLa cells expressing untagged Cidec</name>
        <directory>/data/Reconstructions</directory>
        <category>reconstructed volumes</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>7</numImagesOrTiltSeries>
        <framesPerImage>3</framesPerImage>
        <voxelType>SIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>1920</imageWidth>
            <pixelWidth>7.1</pixelWidth>
            <imageHeight>1854</imageHeight>
            <pixelHeight>7.1</pixelHeight>
        </dimensions>
        <details>Seven reconstructed tomograms, each obtained from the tilt images contained in one subdirectory of the directory RawData. The data was binned during the tilt series alignment. Note that image width and height vary from case to case.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
