#!/bin/bash
#SBATCH -n 1
#SBATCH -N 1
#SBATCH -c 10
#SBATCH --gres=gpu:0                              
#SBATCH --partition=em-cpu
#SBATCH --error=Polish/job235/run.err
#SBATCH --output=Polish/job235/run.out
#SBATCH --open-mode=append
mpirun -np 1 `which relion_motion_refine` --i Refine3D/job221/run_data.star --f PostProcess/job223/postprocess.star --corr_mic MotionCorr/job002/corrected_micrographs.star --first_frame 1 --last_frame -1 --o Polish/job235/ --params_file Polish/job234/opt_params_all_groups.txt --combine_frames --bfac_minfreq 20 --bfac_maxfreq -1 --j 10 --angpix 0.825 --pipeline_control Polish/job235/