<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-11703" schemaVersion="0.63" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2023-05-05</depositionDate>
            <releaseDate>2023-12-04</releaseDate>
            <updateDate>2023-12-04</updateDate>
        </keyDates>
        <title>Clostridium difficile binary toxin translocase CDTb tetradecamer in symmetric and asymmetric conformations</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-9704-3781</authorORCID>
            <firstName>Amédée</firstName>
            <lastName>des Georges</lastName>
            <organization type="academic">CUNY Advanced Science Research Center</organization>
            <street>85 St Nicholas Terrace 3rd floor</street>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>New York</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10031</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-9609-4755</authorORCID>
            <firstName>Xingjian</firstName>
            <lastName>Xu</lastName>
            <organization type="academic">CUNY ASRC</organization>
            <street>85 St Nicholas Terrace 3rd floor</street>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>New York</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10031</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-9704-3781</authorORCID>
            <firstName>Amédée</firstName>
            <lastName>des Georges</lastName>
            <organization type="academic">CUNY Advanced Science Research Center</organization>
            <street>85 St Nicholas Terrace 3rd floor</street>
            <townOrCity>New York</townOrCity>
            <stateOrProvince>New York</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>10031</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-9609-4755">Xu X</author>
            <author authorORCID="0000-0002-8210-3446">Ben-Hail D</author>
            <author authorORCID="0000-0002-9704-3781">des Georges A</author>
            <author authorORCID="0000-0001-7012-5376">Pozharski E</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>National Institutes of Health (NIH)</fundingBody>
                <code>R35GM133598</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">1.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-11703</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-20926</emdbEntry>
            <emdbEntry>EMD-20927</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-9609-4755" order="1">Xu X</author>
                    <author authorORCID="0000-0003-4569-0781" order="2">Godoy-Ruiz R</author>
                    <author order="3">Adipietro KA</author>
                    <author order="4">Peralta C</author>
                    <author authorORCID="0000-0002-8210-3446" order="5">Ben-Hail D</author>
                    <author order="6">Varney KM</author>
                    <author authorORCID="0000-0002-6298-2586" order="7">Cook ME</author>
                    <author order="8">Roth BM</author>
                    <author order="9">Wilder PT</author>
                    <author authorORCID="0000-0003-1992-8450" order="10">Cleveland T</author>
                    <author order="11">Grishaev A</author>
                    <author order="12">Neu HM</author>
                    <author authorORCID="0000-0002-6366-2453" order="13">Michel SLJ</author>
                    <author authorORCID="0000-0001-6962-5314" order="14">Yu W</author>
                    <author order="15">Beckett D</author>
                    <author order="16">Rustandi RR</author>
                    <author order="17">Lancaster C</author>
                    <author order="18">Loughney JW</author>
                    <author order="19">Kristopeit A</author>
                    <author order="20">Christanti S</author>
                    <author order="21">Olson JW</author>
                    <author order="22">MacKerell AD</author>
                    <author order="23">Georges AD</author>
                    <author order="24">Pozharski E</author>
                    <author authorORCID="0000-0002-8824-1110" order="25">Weber DJ</author>
                    <title>Structure of the cell-binding component of the &lt;i&gt;Clostridium difficile&lt;/i&gt; binary toxin reveals a di-heptamer macromolecular assembly</title>
                    <journal>Proceedings of the National Academy of Sciences of the United States of America</journal>
                    <journalAbbreviation>Proc Natl Acad Sci U S A</journalAbbreviation>
                    <country>United States</country>
                    <issue>2</issue>
                    <volume>117</volume>
                    <firstPage>1049</firstPage>
                    <lastPage>1058</lastPage>
                    <year>2020</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1073/pnas.1919490117</externalReferences>
                    <externalReferences type="pubmed">31896582</externalReferences>
                    <details>Two di-heptamer structures for the C. difficile binary toxin subunit CDTb (1.0 MDa) were solved at atomic resolution, including a symmetric (SymCDTb; 3.14 Å) and an asymmetric form (AsymCDTb; 2.84 Å).</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>multi-frame micrographs of CDTB</name>
        <directory>/data/frames</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1205</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED 16 BIT INTEGER</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>1.06</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>1.06</pixelHeight>
        </dimensions>
        <details></details>
        <segmentationList/>
        <micrographsFilePattern>data/frames/18feb27f_CTD_*.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>motion-corrected micrographs of CDTB (no DW)</name>
        <directory>/data/aligned_micrographs/job082/frames</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1205</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>1.06</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>1.06</pixelHeight>
        </dimensions>
        <details></details>
        <segmentationList/>
        <micrographsFilePattern>data/aligned_micrographs/job082/frames/*noDW.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>motion-corrected micrographs of CDTB (DW)</name>
        <directory>/data/aligned_micrographs/job082/frames</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>1205</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>3710</imageWidth>
            <pixelWidth>1.06</pixelWidth>
            <imageHeight>3838</imageHeight>
            <pixelHeight>1.06</pixelHeight>
        </dimensions>
        <details></details>
        <segmentationList/>
        <micrographsFilePattern>data/aligned_micrographs/job082/frames/*frames.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern>data/particles/job099/particles.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
