<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12405" schemaVersion="0.65" public="true">
    <admin>
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        <keyDates>
            <depositionDate>2024-06-13</depositionDate>
            <releaseDate>2024-12-09</releaseDate>
            <updateDate>2024-12-09</updateDate>
        </keyDates>
        <title>Gelsolin-severed and capped F-actin raw data from 'Mechanism of actin filament severing and capping by gelsolin'</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-3186-5229</authorORCID>
            <firstName>Roberto</firstName>
            <lastName>Dominguez</lastName>
            <organization type="academic">Department of Physiology, Perelman School of Medicine, University of Pennsylvania</organization>
            <street>415 Curie Blvd.</street>
            <townOrCity>Philadelphia</townOrCity>
            <stateOrProvince>PA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>19104</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-3186-5229</authorORCID>
            <firstName>Roberto</firstName>
            <lastName>Dominguez</lastName>
            <organization type="academic">Department of Physiology, Perelman School of Medicine, University of Pennsylvania</organization>
            <street>415 Curie Blvd.</street>
            <townOrCity>Philadelphia</townOrCity>
            <stateOrProvince>PA</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>19104</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0003-0860-1639">Barrie KR</author>
            <author authorORCID="0000-0002-0766-6302">Rebowski G</author>
            <author authorORCID="0000-0003-3186-5229">Dominguez R</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)</fundingBody>
                <code>GM073791 and GM152412</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">13.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-12405</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-43262</emdbEntry>
            <emdbEntry>EMD-43263</emdbEntry>
            <emdbEntry>EMD-43264</emdbEntry>
            <emdbEntry>EMD-43268</emdbEntry>
            <emdbEntry>EMD-43274</emdbEntry>
            <emdbEntry>EMD-43316</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-0860-1639" order="1">Barrie KR</author>
                    <author authorORCID="0000-0002-0766-6302" order="2">Rebowski G</author>
                    <author authorORCID="0000-0003-3186-5229" order="3">Dominguez R</author>
                    <title>Mechanism of actin filament severing and capping by gelsolin</title>
                    <journal>Nature structural &amp; molecular biology</journal>
                    <journalAbbreviation>Nat Struct Mol Biol</journalAbbreviation>
                    <country></country>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41594-024-01412-5</externalReferences>
                    <externalReferences type="pubmed">39448849</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Dataset 1</name>
        <directory>/data/Beckman_02222023</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>2945</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>8184</imageWidth>
            <pixelWidth>0.54</pixelWidth>
            <imageHeight>11520</imageHeight>
            <pixelHeight>0.54</pixelHeight>
        </dimensions>
        <details>Dataset 1. Super-resolution movies (binned 2x during motion correction). Total dose = 45.6 electrons/Å^2. The gain reference is also provided as a .mrc file in data/Beckman_02222023/gainref.</details>
        <segmentationList/>
        <micrographsFilePattern>data/Beckman_02222023/movies/*tiff</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 2</name>
        <directory>/data/Beckman_03092023</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>6806</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>8184</imageWidth>
            <pixelWidth>0.54</pixelWidth>
            <imageHeight>11520</imageHeight>
            <pixelHeight>0.54</pixelHeight>
        </dimensions>
        <details>Dataset 2. Super-resolution movies (binned 2x during motion correction). Total dose = 43.7 electrons/Å^2. The gain reference is also provided as a .mrc file in data/Beckman_03092023/gainref.</details>
        <segmentationList/>
        <micrographsFilePattern>data/Beckman_03092023/movies/*tiff</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 3</name>
        <directory>/data/Beckman_04112023</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3682</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>8184</imageWidth>
            <pixelWidth>0.54</pixelWidth>
            <imageHeight>11520</imageHeight>
            <pixelHeight>0.54</pixelHeight>
        </dimensions>
        <details>Dataset 3. Super-resolution movies (binned 2x during motion correction). Total dose = 43.7 electrons/Å^2. The gain reference is also provided as a .mrc file in data/Beckman_04112023/gainref.</details>
        <segmentationList/>
        <micrographsFilePattern>data/Beckman_04112023/movies/*tiff</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 4</name>
        <directory>/data/Beckman_04122023</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>5963</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>8184</imageWidth>
            <pixelWidth>0.54</pixelWidth>
            <imageHeight>11520</imageHeight>
            <pixelHeight>0.54</pixelHeight>
        </dimensions>
        <details>Dataset 4. Super-resolution movies (binned 2x during motion correction). Total dose = 43.7 electrons/Å^2. The gain reference is also provided as a .mrc file in data/Beckman_04122023/gainref.</details>
        <segmentationList/>
        <micrographsFilePattern>data/Beckman_04122023/movies*/*tiff</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Dataset 5</name>
        <directory>/data/Beckman_07022023</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>7814</numImagesOrTiltSeries>
        <framesPerImage>40</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>8184</imageWidth>
            <pixelWidth>0.54</pixelWidth>
            <imageHeight>11520</imageHeight>
            <pixelHeight>0.54</pixelHeight>
        </dimensions>
        <details>Dataset 5. Super-resolution movies (binned 2x during motion correction). Total dose = 44 electrons/Å^2. The gain reference is also provided as a .mrc file in data/Beckman_07022023/gainref.</details>
        <segmentationList/>
        <micrographsFilePattern>data/Beckman_07022023/movies*/*tiff</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Mg-F-actin Severed Dataset</name>
        <directory>/data/Beckman_04052024</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>4594</numImagesOrTiltSeries>
        <framesPerImage>37</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>8184</imageWidth>
            <pixelWidth>0.54</pixelWidth>
            <imageHeight>11520</imageHeight>
            <pixelHeight>0.54</pixelHeight>
        </dimensions>
        <details>PLEASE NOTE: This dataset was not used to generate the associated EMDs and PDBs. This dataset was collected under different sample preparations conditions (Mg-F-actin instead of Ca-G-actin) to demonstrate F-actin severing by gelsolin. The grids used for this dataset were also different (2nm ultra-thin carbon), resulting in a minor orientation bias. Please see methods and Extended Data Fig. 4 in the publication (doi.org/10.1038/s41594-024-01412-5) for more details.

Super-resolution movies (binned 2x during motion correction). Total dose = 45.3 electrons/Å^2. The gain reference is also provided as a .mrc file in data/Beckman_04052024/gainref.</details>
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        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
