<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12870" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2025-01-03</depositionDate>
            <releaseDate>2026-03-02</releaseDate>
            <updateDate>2026-03-02</updateDate>
        </keyDates>
        <title>Patient derived AD PHF with PET Ligand MK-6240</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-9752-7287</authorORCID>
            <firstName>Sarah</firstName>
            <middleName>H.</middleName>
            <lastName>Shahmoradian</lastName>
            <organization type="academic">UTSW Medical Center</organization>
            <street>6000 Harry Hines Blvd</street>
            <townOrCity>Dallas</townOrCity>
            <stateOrProvince>Texas</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>75235</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-9752-7287</authorORCID>
            <firstName>Sarah</firstName>
            <middleName>H.</middleName>
            <lastName>Shahmoradian</lastName>
            <organization type="academic">UTSW Medical Center</organization>
            <street>6000 Harry Hines Blvd</street>
            <townOrCity>Dallas</townOrCity>
            <stateOrProvince>Texas</stateOrProvince>
            <country>United States</country>
            <postOrZipCode>75235</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0001-7428-6812">Kunach P</author>
            <author authorORCID="0000-0001-8363-9579">Vaquer-Alicea J</author>
            <author>Smith MS</author>
            <author authorORCID="0000-0002-4634-818X">Monistrol J</author>
            <author authorORCID="0000-0002-2478-5872">Hopewell R</author>
            <author>Moquin L</author>
            <author authorORCID="0000-0002-7826-4781">Therriault J</author>
            <author authorORCID="0000-0003-2711-3833">Tissot C</author>
            <author authorORCID="0009-0004-3081-8468">Rahmouni N</author>
            <author authorORCID="0000-0003-2259-9627">Massarweh G</author>
            <author authorORCID="0000-0002-8422-2326">Soucy JP</author>
            <author authorORCID="0009-0006-4686-026X">Guiot MC</author>
            <author authorORCID="0000-0002-6098-7367">Shoichet BK</author>
            <author authorORCID="0000-0001-9116-1376">Rosa-Neto P</author>
            <author authorORCID="0000-0002-8085-7770">Diamond MI</author>
            <author authorORCID="0000-0001-9752-7287">Shahmoradian SH</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Cancer Prevention and Research Institute of Texas (CPRIT)</fundingBody>
                <code>RP170644</code>
                <country>United States</country>
            </grantReference>
            <grantReference>
                <fundingBody>Canadian Institutes of Health Research (CIHR)</fundingBody>
                <code>MOP-11-51-31</code>
                <country>Canada</country>
            </grantReference>
            <grantReference>
                <fundingBody>Fonds de la Recherche Scientifique (FNRS)</fundingBody>
                <code>152985</code>
                <country>Canada</country>
            </grantReference>
            <grantReference>
                <fundingBody>Fonds de Recherche du Quebec - Sante (FRQS)</fundingBody>
                <code>2020-VICO-279314</code>
                <country>Canada</country>
            </grantReference>
            <grantReference>
                <fundingBody>National Institutes of Health (NIH)</fundingBody>
                <code>R35GM122481</code>
                <country>United States</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">7.4</datasetSize>
        <entryDOI>10.6019/EMPIAR-12870</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-42463</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0001-7428-6812" order="1">Kunach P</author>
                    <author authorORCID="0000-0001-8363-9579" order="2">Vaquer-Alicea J</author>
                    <author order="3">Smith MS</author>
                    <author authorORCID="0000-0002-4634-818X" order="4">Monistrol J</author>
                    <author authorORCID="0000-0002-2478-5872" order="5">Hopewell R</author>
                    <author order="6">Moquin L</author>
                    <author authorORCID="0000-0002-7826-4781" order="7">Therriault J</author>
                    <author authorORCID="0000-0003-2711-3833" order="8">Tissot C</author>
                    <author authorORCID="0009-0004-3081-8468" order="9">Rahmouni N</author>
                    <author authorORCID="0000-0003-2259-9627" order="10">Massarweh G</author>
                    <author authorORCID="0000-0002-8422-2326" order="11">Soucy JP</author>
                    <author authorORCID="0009-0006-4686-026X" order="12">Guiot MC</author>
                    <author authorORCID="0000-0002-6098-7367" order="13">Shoichet BK</author>
                    <author authorORCID="0000-0001-9116-1376" order="14">Rosa-Neto P</author>
                    <author authorORCID="0000-0002-8085-7770" order="15">Diamond MI</author>
                    <author authorORCID="0000-0001-9752-7287" order="16">Shahmoradian SH</author>
                    <title>Cryo-EM structure of Alzheimer's disease tau filaments with PET ligand MK-6240</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <issue>1</issue>
                    <volume>15</volume>
                    <firstPage>8497</firstPage>
                    <lastPage>8497</lastPage>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-024-52265-x</externalReferences>
                    <externalReferences type="pubmed">39353896</externalReferences>
                    <details>RAW movies collected using CDS mode, total dose of 62 e/A2, 8EPS. 0.415A super resolution pixel size.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame movies of tau filaments from sporadic AD complexed to PET ligand MK-6240 (10uM)</name>
        <directory>/data/RAW_Tif</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3978</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.415</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.415</pixelHeight>
        </dimensions>
        <details>dose per frame: ~1.04 e-/A2/frame;</details>
        <segmentationList/>
        <micrographsFilePattern>data/RAW_Tif/Peter_08032022_119-1_00001_X-1Y-1-1.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/job004/manualpick.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/job004/RAW_Tif</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multi-frame movies of tau filaments from sporadic AD incubated with pan-Amyloid dye Thioflavin T (10uM)</name>
        <directory>/data/RAW_Tif_ThT</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>4195</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.415</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.415</pixelHeight>
        </dimensions>
        <details>dose per frame: ~1.04 e-/A2/frame;</details>
        <segmentationList/>
        <micrographsFilePattern>data/RAW_Tif_ThT/Peter_08042022_124-1_00009_X+1Y-1-3.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/ManualPick_ThT</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/ManualPick_ThT/RAW_Tif</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multi-frame movies of tau filaments from sporadic AD incubated with 3% DMSO</name>
        <directory>/data/RAW_TIF_DMSO_Control</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3842</numImagesOrTiltSeries>
        <framesPerImage>60</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.415</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.415</pixelHeight>
        </dimensions>
        <details>dose per frame: ~1.0 e-/A2/frame;</details>
        <segmentationList/>
        <micrographsFilePattern>data/RAW_TIF_DMSO_Control/AD_ctrl_2_00018_13.40.38.tif</micrographsFilePattern>
        <pickedParticlesFilePattern>data/ManualPick_DMSO_Control/RAW_TIF_Combined_Keep/AD_ctrl_2_00018_13_40_38_manualpick.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/ManualPick_DMSO_Control</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multi-frame movies of tau filaments from sporadic AD incubated native condition</name>
        <directory>/data/RAW_TIF_Native</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>5360</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>0.415</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>0.415</pixelHeight>
        </dimensions>
        <details>dose per frame: ~1.04 e-/A2/frame;</details>
        <segmentationList/>
        <micrographsFilePattern>data/RAW_TIF_Native</micrographsFilePattern>
        <pickedParticlesFilePattern>data/ManualPick_Native</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/ManualPick_Native/RAW_TIF</pickedParticlesDirectory>
    </imageSet>
</entry>
