<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12875" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2024-09-26</depositionDate>
            <releaseDate>2025-10-29</releaseDate>
            <updateDate>2025-10-29</updateDate>
        </keyDates>
        <title>Electron Cryomicroscopy of alpha-Latrotoxin</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-4922-4545</authorORCID>
            <firstName>Christos</firstName>
            <lastName>Gatsogiannis</lastName>
            <organization type="academic">Center for Soft Nanoscience and Institute of Medical Physics and Biophysics</organization>
            <street>Busso-Peus-Str. 10</street>
            <townOrCity>Münster</townOrCity>
            <stateOrProvince>NRW</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>48149</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-4922-4545</authorORCID>
            <firstName>Christos</firstName>
            <lastName>Gatsogiannis</lastName>
            <organization type="academic">Center for Soft Nanoscience and Institute of Medical Physics and Biophysics</organization>
            <street>Busso-Peus-Str. 10</street>
            <townOrCity>Münster</townOrCity>
            <stateOrProvince>NRW</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>48149</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-0946-4456">Klink B</author>
            <author authorORCID="0000-0002-0588-893X">Kalyankumar KS</author>
            <author authorORCID="0000-0002-4922-4545">Gatsogiannis C</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>German Research Foundation (DFG)</fundingBody>
                <code>SFB1348 (Project A15( to C.G.)</code>
                <country>Germany</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">27.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-12875</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-51494</emdbEntry>
            <emdbEntry>EMD-51465</emdbEntry>
            <emdbEntry>EMD-51467</emdbEntry>
            <emdbEntry>EMD-51468</emdbEntry>
            <emdbEntry>EMD-51469</emdbEntry>
            <emdbEntry>EMD-51472</emdbEntry>
            <emdbEntry>EMD-51473</emdbEntry>
            <emdbEntry>EMD-51474</emdbEntry>
            <emdbEntry>EMD-51475</emdbEntry>
            <emdbEntry>EMD-51492</emdbEntry>
            <emdbEntry>EMD-51495</emdbEntry>
            <emdbEntry>EMD-51476</emdbEntry>
            <emdbEntry>EMD-51479</emdbEntry>
            <emdbEntry>EMD-51485</emdbEntry>
            <emdbEntry>EMD-51484</emdbEntry>
            <emdbEntry>EMD-51488</emdbEntry>
            <emdbEntry>EMD-51490</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="true">
                    <author authorORCID="0000-0002-0946-4456" order="1">Klink B</author>
                    <author authorORCID="0000-0002-3358-6744" order="2">Alavizargar A</author>
                    <author authorORCID="0000-0002-0588-893X" order="3">Kalyankumar KS</author>
                    <author authorORCID="0000-0002-7668-3974" order="4">Chen M</author>
                    <author authorORCID="0000-0003-2592-0287" order="5">Heuer A</author>
                    <author authorORCID="0000-0002-4922-4545" order="6">Gatsogiannis C</author>
                    <title>Molecular mechanism of α-latrotoxin action</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation>bioRxiv</journalAbbreviation>
                    <country>Germany</country>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1101/2024.03.06.583760</externalReferences>
                    <details>The EER movies are the unmodified raw movies with a total electron dose of 50 electrons per squared Angstrom.</details>
                </journalCitation>
            </universalCitation>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0002-0946-4456" order="1">Klink BU</author>
                    <author authorORCID="0000-0002-3358-6744" order="2">Alavizargar A</author>
                    <author authorORCID="0000-0002-0588-893X" order="3">Kalyankumar KS</author>
                    <author authorORCID="0000-0002-7668-3974" order="4">Chen M</author>
                    <author authorORCID="0000-0003-2592-0287" order="5">Heuer A</author>
                    <author authorORCID="0000-0002-4922-4545" order="6">Gatsogiannis C</author>
                    <editor order="1"> </editor>
                    <title>Structural basis of α-latrotoxin transition to a cation-selective pore</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <issue>1</issue>
                    <volume>15</volume>
                    <year>2024</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-024-52635-5</externalReferences>
                    <externalReferences type="pubmed">39362850</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
        <relatedEmpiarEntries>
            <empiarEntry>EMPIAR-12308</empiarEntry>
        </relatedEmpiarEntries>
    </crossReferences>
    <imageSet>
        <name>Motion corrected micrographs of alpha-LTX</name>
        <directory>/data/aLTX_mrcs_4_EMPIAR</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>87895</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.58</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.58</pixelHeight>
        </dimensions>
        <details>Motion corrected micrographs of alpha-LTX. The micrographs are the motion corrected average of 49-51 movie fractions, which were themself created from 918-1225 EER movie frames. The accumulated electron dose was ~50 electrons per square Angstroem. The coordinates for the aLTX Pore and Prepore state are located in the respective folders data/aLTX_Coordinates_Pore_4_EMPIAR and data/aLTX_Coordinates_Prepore_4_EMPIAR, Picked particle positions are in corresponding .box text files (with X and Y coordinates in 1st and second column respectively). The movies in Falcon 4i Electron Event Representation (EER) are in the folder data/aLTX_EERs_4_EMPIAR.</details>
        <segmentationList/>
        <micrographsFilePattern>data/aLTX_mrcs_4_EMPIAR/job*/*_EER.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern>data/aLTX_Coordinates_*_4_EMPIAR/Coordinates_*/*_EER.box</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/aLTX_Coordinates_Prepore_4_EMPIAR</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned Falcon 4i movies in Electron Event Representation (EER)</name>
        <directory>/data/aLTX_EERs_4_EMPIAR</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>EER</headerFormat>
        <dataFormat>EER</dataFormat>
        <numImagesOrTiltSeries>87915</numImagesOrTiltSeries>
        <framesPerImage>0</framesPerImage>
        <voxelType>BIT</voxelType>
        <dimensions>
            <imageWidth>16384</imageWidth>
            <pixelWidth>0.145</pixelWidth>
            <imageHeight>16384</imageHeight>
            <pixelHeight>0.145</pixelHeight>
        </dimensions>
        <details>Movies in Falcon 4i Electron Event Representation (EER).</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Particle Coordinates of the aLTX prepore state in Sphire .box format</name>
        <directory>/data/aLTX_Coordinates_Prepore_4_EMPIAR</directory>
        <category>picked particles - single frame - unprocessed</category>
        <headerFormat>SPIDER</headerFormat>
        <dataFormat>SPIDER</dataFormat>
        <numImagesOrTiltSeries>442105</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.58</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.58</pixelHeight>
        </dimensions>
        <details>Particle positions of aLTX Prepore in corresponding .box text files (with X and Y coordinates in 1st and second column respectively, as used by the software package SPHIRE).</details>
        <segmentationList/>
        <micrographsFilePattern>data/aLTX_mrcs_4_EMPIAR/job*/FoilHole_*</micrographsFilePattern>
        <pickedParticlesFilePattern>data/aLTX_Coordinates_Prepore_*/Coordinates_Prepore_*/*.box</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/aLTX_Coordinates_Prepore_*</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Particle Coordinates of the aLTX Pore state in Sphire .box format</name>
        <directory>/data/aLTX_Coordinates_Pore_4_EMPIAR</directory>
        <category>picked particles - single frame - unprocessed</category>
        <headerFormat>SPIDER</headerFormat>
        <dataFormat>SPIDER</dataFormat>
        <numImagesOrTiltSeries>70971</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>0.58</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>0.58</pixelHeight>
        </dimensions>
        <details>Particle positions of aLTX Pore in corresponding .box text files (with X and Y coordinates in 1st and second column respectively, as used by the software package SPHIRE).</details>
        <segmentationList/>
        <micrographsFilePattern>data/aLTX_mrcs_4_EMPIAR/job*/FoilHole_*</micrographsFilePattern>
        <pickedParticlesFilePattern>data/aLTX_Coordinates_Pore_*/Coordinates_Pore_*/*.box</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/aLTX_Coordinates_Pore_*</pickedParticlesDirectory>
    </imageSet>
</entry>
