<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12913" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2025-07-25</depositionDate>
            <releaseDate>2025-12-07</releaseDate>
            <updateDate>2025-12-07</updateDate>
        </keyDates>
        <title>Single particle Cryo-EM structure of the Pdr5 drug resistance transporter</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0003-1144-9877</authorORCID>
            <firstName>Bonaventure</firstName>
            <lastName>Luisi</lastName>
            <organization type="academic">Department of Biochemistry, Sanger Building, University of Cambridge</organization>
            <street>80 Tennis Court Roa</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 1GA</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0003-1144-9877</authorORCID>
            <firstName>Bonaventura</firstName>
            <lastName>Luisi</lastName>
            <organization type="academic">Department of Biochemistry, Sanger Building, University of Cambridge</organization>
            <street>80 Tennis Court Road</street>
            <townOrCity>Cambridge</townOrCity>
            <stateOrProvince>Cambridgeshire</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>CB2 1GA</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Harris A</author>
            <author>Wagner M</author>
            <author>Du D</author>
            <author>Raschka S</author>
            <author>Nentwig LM</author>
            <author>Gohlke H</author>
            <author>Smits SHJ</author>
            <author>Luisi BF</author>
            <author>Schmitt L</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>Projekt DEAL</fundingBody>
                <code>none</code>
                <country>United Kingdom</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">3.8</datasetSize>
        <entryDOI>10.6019/EMPIAR-12913</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-13142</emdbEntry>
            <emdbEntry>EMD-13143</emdbEntry>
            <emdbEntry>EMD-13144</emdbEntry>
            <emdbEntry>EMD-13145</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author authorORCID="0000-0003-4885-7401" order="1">Harris A</author>
                    <author order="2">Wagner M</author>
                    <author authorORCID="0009-0008-8825-4932" order="3">Du D</author>
                    <author order="4">Raschka S</author>
                    <author order="5">Nentwig LM</author>
                    <author authorORCID="0000-0001-8613-1447" order="6">Gohlke H</author>
                    <author authorORCID="0000-0003-0780-9251" order="7">Smits SHJ</author>
                    <author authorORCID="0000-0003-1144-9877" order="8">Luisi BF</author>
                    <author authorORCID="0000-0002-1167-9819" order="9">Schmitt L</author>
                    <title>Structure and efflux mechanism of the yeast pleiotropic drug resistance transporter Pdr5</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country>United Kingdom</country>
                    <issue>1</issue>
                    <volume>12</volume>
                    <year>2021</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41467-021-25574-8</externalReferences>
                    <externalReferences type="pubmed">34489436</externalReferences>
                    <details>Unaligned micrographs of the Pdr5 transporter complex, separated into three separate data collections.</details>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi frame micrographs of Pdr5 bound to ADP.</name>
        <directory>/data/Pdr5_03aug20_Micrographs</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3415</numImagesOrTiltSeries>
        <framesPerImage>49</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>Pdr5 sample with added ATP yielded a map containing the hydrolysed nucleotide ADP in the canonical and ATP in the inactive site, referred to in the paper as ADP-Pdr5.</details>
        <segmentationList/>
        <micrographsFilePattern>data/Pdr5_03aug20_Micrographs</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multi frame micrographs of Pdr5 bound to R6G.</name>
        <directory>/data/Pdr5_R6G_11aug20_Micrographs</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>3604</numImagesOrTiltSeries>
        <framesPerImage>49</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>Pdr5 with added ATP and transport substrate rhodamine 6 G (R6G).</details>
        <segmentationList/>
        <micrographsFilePattern>data/Pdr5_R6G_11aug20_Micrographs</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multi frame micrographs of Pdr5 bound to ADP.</name>
        <directory>/data/Pdr5_Vi_14aug20_Micrographs</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>8370</numImagesOrTiltSeries>
        <framesPerImage>49</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>Pdr5 with added ATP and sodium orthovanadate (Vi).</details>
        <segmentationList/>
        <micrographsFilePattern>data/Pdr5_Vi_14aug20_Micrographs</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
