<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-12967" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2025-09-11</depositionDate>
            <releaseDate>2025-09-15</releaseDate>
            <updateDate>2025-09-15</updateDate>
        </keyDates>
        <title>Serial Block Face - Scanning Electron Microscopy of brain microvessels with/without P. falciparum egress products</title>
        <correspondingAuthor private="true">
            <firstName>Maria</firstName>
            <lastName>Bernabeu</lastName>
            <organization type="academic">EMBL Barcelona</organization>
            <townOrCity>Barcelona</townOrCity>
            <country>Spain</country>
            <postOrZipCode>08003</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <firstName>Maria</firstName>
            <lastName>Bernabeu</lastName>
            <organization type="academic">EMBL Barcelona</organization>
            <townOrCity>Barcelona</townOrCity>
            <country>Spain</country>
            <postOrZipCode>08003</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Long RKML</author>
            <author>Ronchi PR</author>
            <author>Bernabeu MB</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">2.3</datasetSize>
        <entryDOI>10.6019/EMPIAR-12967</entryDOI>
        <experimentType>SBF-SEM</experimentType>
        <scale>tissue</scale>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="true">
                    <author order="1">Long RKML</author>
                    <author order="2">Korbmacher FK</author>
                    <author order="3">Ronchi PR</author>
                    <author order="4">Fleckenstein HF</author>
                    <author order="5">Schorb MS</author>
                    <author order="6">Mirza WM</author>
                    <author order="7">Mallorqui MM</author>
                    <author order="8">Aguilar RA</author>
                    <author order="9">Moncunill GM</author>
                    <author order="10">Schwab YS</author>
                    <author order="11">Bernabeu MB</author>
                    <title>Plasmodium falciparum impairs Ang-1 secretion by pericytes in a 3D brain microvessel model</title>
                    <journal>BioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <externalReferences type="doi">10.1101/2024.03.29.587334</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Media_only_treated_brain_microvessel_22_22_250_8bit.tif</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>379</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>original acquisition file binned to voxel size of 22x22x250 nm</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Media_only_treated_brain_microvessel_22_22_250_segmentation.tif</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>379</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>segmentation of the file Media_only_treated_brain_microvessel_22_22_250_8bit.tif</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Egress_media_treated_brain_microvessel_22_22_250_8bit.tif</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>405</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>original acquisition file binned to voxel size of 22x22x250 nm</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Egress_media_treated_brain_microvessel_22_22_250_segmentation</name>
        <directory>/data</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>405</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>variable</imageWidth>
            <pixelWidth>variable</pixelWidth>
            <imageHeight>variable</imageHeight>
            <pixelHeight>variable</pixelHeight>
        </dimensions>
        <details>segmentation of the file Egress_media_treated_brain_microvessel_22_22_250_8bit.tif</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
