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        <keyDates>
            <depositionDate>2025-10-10</depositionDate>
            <releaseDate>2025-12-12</releaseDate>
            <updateDate>2025-12-12</updateDate>
        </keyDates>
        <title>Cryo electron tomography of HIV-1 cores isolated by sedimentation through sucrose gradient</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-0634-538X</authorORCID>
            <firstName>Peter</firstName>
            <lastName>Cherepanov</lastName>
            <organization type="academic">The Francis Crick Institute</organization>
            <street>1 Midland Road</street>
            <townOrCity>London</townOrCity>
            <stateOrProvince>London</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>NW1 1AT</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
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            <firstName>Peter</firstName>
            <lastName>Cherepanov</lastName>
            <organization type="academic">The Francis Crick Institute</organization>
            <street>1 Midland Road</street>
            <townOrCity>London</townOrCity>
            <stateOrProvince>London</stateOrProvince>
            <country>United Kingdom</country>
            <postOrZipCode>NW1 1AT</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-3791-2447">Nans A</author>
            <author authorORCID="0000-0002-9486-3944">Chenavier F</author>
            <author authorORCID="0000-0003-2742-5538">Hope J</author>
            <author authorORCID="0000-0003-1803-691X">Zhang P</author>
            <author authorORCID="0000-0002-0634-538X">Cherepanov P</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</fundingBody>
                <code>U54AI170791</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Wellcome Trust</fundingBody>
                <code>CC2058</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Medical Research Council (MRC, United Kingdom)</fundingBody>
                <code>CC2058</code>
                <country>United Kingdom</country>
            </grantReference>
            <grantReference>
                <fundingBody>Cancer Research UK</fundingBody>
                <code>CC2058</code>
                <country>United Kingdom</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">11.0</datasetSize>
        <entryDOI>10.6019/EMPIAR-13078</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>virus</scale>
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        <relatedEMDBEntries>
            <emdbEntry>EMD-55409</emdbEntry>
        </relatedEMDBEntries>
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            <universalCitation>
                <journalCitation published="false" preprint="false">
                    <author authorORCID="0000-0002-5498-4469" order="1">Singer RM</author>
                    <author order="2">Zhen L</author>
                    <author authorORCID="0000-0003-2274-3748" order="3">Rey SJ</author>
                    <author authorORCID="0000-0003-2742-5538" order="4">Hope J</author>
                    <author authorORCID="0000-0002-9486-3944" order="5">Chenavier F</author>
                    <author authorORCID="0000-0002-2738-7976" order="6">Cook JN</author>
                    <author authorORCID="0000-0002-5477-6619" order="7">Punch E</author>
                    <author authorORCID="0009-0002-4515-9499" order="8">Smith J</author>
                    <author authorORCID="0009-0003-1329-5311" order="9">Zhou Z</author>
                    <author authorORCID="0000-0002-0261-2866" order="10">Maslen S</author>
                    <author authorORCID="0000-0002-5326-7003" order="11">Masino L</author>
                    <author authorORCID="0000-0002-3791-2447" order="12">Nans A</author>
                    <author authorORCID="0000-0002-2432-0901" order="13">Skehel M</author>
                    <author authorORCID="0000-0002-6763-3852" order="14">Taylor AI</author>
                    <author authorORCID="0000-0003-1905-0342" order="15">Zanetti G</author>
                    <author authorORCID="0000-0003-1803-691X" order="16">Zhang P</author>
                    <author authorORCID="0000-0003-1171-6816" order="17">Perilla RJ</author>
                    <author authorORCID="0000-0002-9709-2591" order="18">Engelman NA</author>
                    <author authorORCID="0000-0002-0634-538X" order="19">Cherepanov P</author>
                    <editor authorORCID="0000-0002-3791-2447" order="1">Nans A</editor>
                    <title>Structural bases for integrase-RNA binding and retention of viral RNA within HIV-1 capsid cores</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <language>English</language>
                    <details>The data represent 14 tilt series, each from −60° to +60° with 3° increments, recorded using Krios G2 microscope with Falcon 4i detector and a Selectris energy filter. The data was acquired using the dose-symmetric scheme, a total exposure of 104 e/Å2 (2.5 e/Å2 per tilt), a calibrated magnification resulting in a pixel size of 1.56 Å, and a defocus range of -2.5 to -5.5 µm. Each tilt micrograph movie contains 6 frames in TIFF format. The calibrated tilt axis is 95 degrees.</details>
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    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs from tilt series of HIV-1 cores, associated mdoc files, and gain reference</name>
        <directory>/data</directory>
        <category>tilt series</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>14</numImagesOrTiltSeries>
        <framesPerImage>6</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>1.56</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>1.56</pixelHeight>
        </dimensions>
        <details>Each tilt image is comprised of 6 unaligned raw movie frames in TIFF format without gain correction. Gain reference is supplied as a separate file. Dose per tilt image is 2.54 e/A2 and total dose for each tilt series is 104 e/A2. Tilt azimuth is is 95 degrees.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
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