<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-13298" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2026-02-08</depositionDate>
            <releaseDate>2026-03-23</releaseDate>
            <updateDate>2026-03-23</updateDate>
        </keyDates>
        <title>Cryo electron tomography of yeast FIB-milled lamella after sublimation</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-1890-5524</authorORCID>
            <firstName>Genís</firstName>
            <lastName>Valentín Gesé</lastName>
            <organization type="academic">Karolinska Institutet</organization>
            <street>Solnavagen 9</street>
            <townOrCity>Solna</townOrCity>
            <country>Sweden</country>
            <postOrZipCode>17165</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-1890-5524</authorORCID>
            <firstName>B. Martin</firstName>
            <lastName>Hallberg</lastName>
            <organization type="academic">Karolinska Institutet</organization>
            <street>Solnavagen 9</street>
            <townOrCity>Solna</townOrCity>
            <country>Sweden</country>
            <postOrZipCode>17165</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0000-0002-7585-5244">Bondy AL</author>
            <author authorORCID="0000-0002-1890-5524">Valentin Gese G</author>
            <author authorORCID="0000-0002-0999-3569">Thersleff T</author>
            <author authorORCID="0000-0002-6781-0345">Hallberg BM</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="GB">857.7</datasetSize>
        <entryDOI>10.6019/EMPIAR-13298</entryDOI>
        <experimentType>FIB-SEM</experimentType>
        <scale>cell</scale>
    </admin>
    <crossReferences>
        <citationList>
            <universalCitation>
                <journalCitation published="false" preprint="false">
                    <author authorORCID="0000-0002-7585-5244" order="1">Bondy AL</author>
                    <author authorORCID="0000-0002-1890-5524" order="2">Valentin Gese G</author>
                    <author authorORCID="0000-0002-0999-3569" order="3">Thersleff T</author>
                    <author authorORCID="0000-0002-6781-0345" order="4">Hallberg BM</author>
                    <title>In-Chamber Sublimation: A Hands-On Hack to Beat Ice and Curtaining in Cryo-Electron Tomography Lamella Prep</title>
                    <journal></journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Unaligned multi-frame micrographs of FIB-milled yeast lamella</name>
        <directory>/data/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>657</numImagesOrTiltSeries>
        <framesPerImage>6</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>11520</imageWidth>
            <pixelWidth>1.34</pixelWidth>
            <imageHeight>8184</imageHeight>
            <pixelHeight>1.34</pixelHeight>
        </dimensions>
        <details>MDOC files for each tilt-series are in the folder "MDOC". 
Movie averages after WARP 1.0.9 processing (bin 1, pixel size 2.68) are in the folder "average".
Aretomo-reconstructed tomograms (10.72 A/px), tilt-series alignments (*.xf) and other aretomo output files are in the folder "aretomo".
WARP-reconstructed tomograms (16.08 A/px), as well as denoised tomograms (WARP noise2map) are in the folder reconstruction.
Subtomograms exported by M, as well as CTF files, are in the folder "subtomo_EMPIAR". The corresponding particle coordinates and poses after RELION 3.1 refinement are in the file run_data.star.</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
