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            <depositionDate>2025-12-09</depositionDate>
            <releaseDate>2026-05-31</releaseDate>
            <updateDate>2026-05-31</updateDate>
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        <title>Single-particle cryo-EM structures of E. coli 70S ribosomes, WT and mutants with trapped RNA conformational ground and excited states</title>
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            <authorORCID>0000-0001-9470-0347</authorORCID>
            <firstName>Katja</firstName>
            <lastName>Petzold</lastName>
            <organization type="academic">Department of Medical Biochemistry and Microbiology, Uppsala University</organization>
            <street>Husargatan 3</street>
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            <country>Sweden</country>
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            <firstName>Katja</firstName>
            <lastName>Petzold</lastName>
            <organization type="academic">Department of Medical Biochemistry and Microbiology, Uppsala University</organization>
            <street>Husargatan 3</street>
            <townOrCity>Uppsala</townOrCity>
            <country>Sweden</country>
            <postOrZipCode>752 37</postOrZipCode>
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                <fundingBody>H2020 Marie Curie Actions of the European Commission</fundingBody>
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                <country>European Union</country>
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                <fundingBody>The Swedish Foundation for Strategic Research</fundingBody>
                <code>ICA14-0023</code>
                <country>Sweden</country>
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                <fundingBody>Swedish Research Council</fundingBody>
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                <code>2018-00250</code>
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                <fundingBody>Carl Trygger Foundation</fundingBody>
                <code>CTS14-383</code>
                <country>Sweden</country>
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                <fundingBody>Carl Trygger Foundation</fundingBody>
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                <country>Sweden</country>
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                    <author authorORCID="0000-0002-8031-3562" order="1">Steinmetzger C</author>
                    <author order="2">Karlsson H</author>
                    <author order="3">Fontana C</author>
                    <author order="4">Galindo Riera N</author>
                    <author authorORCID="0000-0002-5497-085X" order="5">Riad M</author>
                    <author order="6">Kosek D</author>
                    <author order="7">Schlagnitweit J</author>
                    <author order="8">Steiner E</author>
                    <author order="9">Sandoz SF</author>
                    <author order="10">Andersson ER</author>
                    <author authorORCID="0000-0001-9470-0347" order="11">Petzold K</author>
                    <title>Universal 3D Motif dynamics in RNA: The A-minor Switch</title>
                    <journal>bioRxiv</journal>
                    <journalAbbreviation></journalAbbreviation>
                    <country></country>
                    <year>2026</year>
                    <externalReferences type="doi">10.64898/2026.05.08.718354</externalReferences>
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        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7585</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h44-top_gs/rotated/trna_pe_EMD-56842/h44-top_gs.rotated.trna_pe.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h44-top_gs/rotated/trna_pe_EMD-56842/J115/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multi-frame micrographs of E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop</name>
        <directory>/data/h44-top_es/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>19249</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.505</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.505</pixelHeight>
        </dimensions>
        <details>Movies were collected using a Titan Krios G3i microscope (Thermo Fisher Scientific) operating at 300 kV equipped with a K3 BioQuantum detector (Gatan) at the Karolinska Institutet 3D-EM facility in Solna, Sweden. The data was acquired using EPU software (Thermo Fisher Scientific) with a pixel size of 0.505 Å/px (nominal magnification 165000x), electron dose of ~50 e−/Å2, 50 frames per movie, and a defocus range of −0.3 to −2.0 µm.

The movies are gain-corrected.</details>
        <segmentationList/>
        <micrographsFilePattern>data/h44-top_es/movies/*.tiff</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>PDB 28UI / EMD-56828: E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA</name>
        <directory>/data/h44-top_es/unrotated/trna_a-p_PDB-28UI_EMD-56828</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>80169</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7585</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h44-top_es/unrotated/trna_a-p_PDB-28UI_EMD-56828/h44-top_es.unrotated.trna_a-p.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h44-top_es/unrotated/trna_a-p_PDB-28UI_EMD-56828/J106/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56843: E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with P-site tRNA</name>
        <directory>/data/h44-top_es/unrotated/trna_p_EMD-56843</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>85044</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7585</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h44-top_es/unrotated/trna_p_EMD-56843/h44-top_es.unrotated.trna_p.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h44-top_es/unrotated/trna_p_EMD-56843/J107/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56844: E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, without tRNA</name>
        <directory>/data/h44-top_es/unrotated/trna_vacant_EMD-56844</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>84558</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7585</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h44-top_es/unrotated/trna_vacant_EMD-56844/h44-top_es.unrotated.trna_vacant.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h44-top_es/unrotated/trna_vacant_EMD-56844/J108/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>PDB 28UJ / EMD-56829: E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA</name>
        <directory>/data/h44-top_es/rotated/trna_ap-pe_PDB-28UJ_EMD-56829</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>62030</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7585</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h44-top_es/rotated/trna_ap-pe_PDB-28UJ_EMD-56829/h44-top_es.rotated.trna_ap-pe.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h44-top_es/rotated/trna_ap-pe_PDB-28UJ_EMD-56829/J109/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56845: E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P/E-site tRNA</name>
        <directory>/data/h44-top_es/rotated/trna_a-pe_EMD-56845</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>39381</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7585</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h44-top_es/rotated/trna_a-pe_EMD-56845/h44-top_es.rotated.trna_a-pe.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h44-top_es/rotated/trna_a-pe_EMD-56845/J110/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56846: E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with P/E-site tRNA</name>
        <directory>/data/h44-top_es/rotated/trna_pe_EMD-56846</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>36302</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7585</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h44-top_es/rotated/trna_pe_EMD-56846/h44-top_es.rotated.trna_pe.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h44-top_es/rotated/trna_pe_EMD-56846/J111/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multi-frame micrographs of E. coli 70S ribosome, conformational ground state mutation in SSU-h41</name>
        <directory>/data/h41_gs/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>5412</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.505</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.505</pixelHeight>
        </dimensions>
        <details>Movies were collected using a Titan Krios G3i microscope (Thermo Fisher Scientific) operating at 300 kV equipped with a K3 BioQuantum detector (Gatan) at the Karolinska Institutet 3D-EM facility in Solna, Sweden. The data was acquired using EPU software (Thermo Fisher Scientific) with a pixel size of 0.505 Å/px (nominal magnification 165000x), electron dose of ~50 e−/Å2, 50 frames per movie, and a defocus range of −0.3 to −2.0 µm.

The movies are gain-corrected.</details>
        <segmentationList/>
        <micrographsFilePattern>data/h41_gs/movies/*.tiff</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>PDB 28UK / EMD-56830: E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P-site tRNA</name>
        <directory>/data/h41_gs/unrotated/trna_a-p_PDB-28UK_EMD-56830</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>23232</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h41_gs/unrotated/trna_a-p_PDB-28UK_EMD-56830/h41_gs.unrotated.trna_a-p.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h41_gs/unrotated/trna_a-p_PDB-28UK_EMD-56830/J109/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56847: E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with P-site tRNA</name>
        <directory>/data/h41_gs/unrotated/trna_p_EMD-56847</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>36584</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h41_gs/unrotated/trna_p_EMD-56847/h41_gs.unrotated.trna_p.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h41_gs/unrotated/trna_p_EMD-56847/J111/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56848: E. coli 70S ribosome, conformational ground state mutation in SSU-h41, without tRNA</name>
        <directory>/data/h41_gs/unrotated/trna_vacant_EMD-56848</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>31773</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h41_gs/unrotated/trna_vacant_EMD-56848/h41_gs.unrotated.trna_vacant.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h41_gs/unrotated/trna_vacant_EMD-56848/J110/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>PDB 28UL / EMD-56831: E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA</name>
        <directory>/data/h41_gs/rotated/trna_ap-pe_PDB-28UL_EMD-56831</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>13469</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h41_gs/rotated/trna_ap-pe_PDB-28UL_EMD-56831/h41_gs.rotated.trna_ap-pe.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h41_gs/rotated/trna_ap-pe_PDB-28UL_EMD-56831/J112/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56849: E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A- and P/E-site tRNA</name>
        <directory>/data/h41_gs/rotated/trna_a-pe_EMD-56849</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>3152</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h41_gs/rotated/trna_a-pe_EMD-56849/h41_gs.rotated.trna_a-pe.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h41_gs/rotated/trna_a-pe_EMD-56849/J114/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56850: E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with P/E-site tRNA</name>
        <directory>/data/h41_gs/rotated/trna_pe_EMD-56850</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>10172</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h41_gs/rotated/trna_pe_EMD-56850/h41_gs.rotated.trna_pe.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h41_gs/rotated/trna_pe_EMD-56850/J113/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Unaligned multi-frame micrographs of E. coli 70S ribosome, conformational excited state mutation in SSU-h41</name>
        <directory>/data/h41_es/movies</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>6193</numImagesOrTiltSeries>
        <framesPerImage>50</framesPerImage>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.505</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.505</pixelHeight>
        </dimensions>
        <details>Movies were collected using a Titan Krios G3i microscope (Thermo Fisher Scientific) operating at 300 kV equipped with a K3 BioQuantum detector (Gatan) at the Karolinska Institutet 3D-EM facility in Solna, Sweden. The data was acquired using EPU software (Thermo Fisher Scientific) with a pixel size of 0.505 Å/px (nominal magnification 165000x), electron dose of ~50 e−/Å2, 50 frames per movie, and a defocus range of −0.3 to −2.0 µm.

The movies are gain-corrected.</details>
        <segmentationList/>
        <micrographsFilePattern>data/h41_es/movies/*.tiff</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>PDB 28UM / EMD-56832: E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA</name>
        <directory>/data/h41_es/unrotated/trna_a-p_PDB-28UM_EMD-56832</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>34748</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h41_es/unrotated/trna_a-p_PDB-28UM_EMD-56832/h41_es.unrotated.trna_a-p.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h41_es/unrotated/trna_a-p_PDB-28UM_EMD-56832/J261/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56851: E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with P-site tRNA</name>
        <directory>/data/h41_es/unrotated/trna_p_EMD-56851</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>34669</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h41_es/unrotated/trna_p_EMD-56851/h41_es.unrotated.trna_p.star</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/h41_es/unrotated/trna_p_EMD-56851/J262/restack</pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>EMD-56852: E. coli 70S ribosome, conformational excited state mutation in SSU-h41, without tRNA</name>
        <directory>/data/h41_es/unrotated/trna_vacant_EMD-56852</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>58515</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/h41_es/unrotated/trna_vacant_EMD-56852/h41_es.unrotated.trna_vacant.star</pickedParticlesFilePattern>
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        <dataFormat>MRC</dataFormat>
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        <framesPerImage>1</framesPerImage>
        <voxelType>16 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>576</imageWidth>
            <pixelWidth>0.7575</pixelWidth>
            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
        </dimensions>
        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
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        <directory>/data/h41_es/rotated/trna_a-pe_EMD-56853</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
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        <framesPerImage>1</framesPerImage>
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            <imageHeight>576</imageHeight>
            <pixelHeight>0.7575</pixelHeight>
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        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
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        <directory>/data/h41_es/rotated/trna_pe_EMD-56854</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
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        <framesPerImage>1</framesPerImage>
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        <details>Particle stack after 3D classification, reference-based motion correction, 3D variability analysis. With local + global CTF refinement and negative EWS correction.

Pixel size after calibration against PDB 4YBB is 0.7575</details>
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</entry>
