<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-13386" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2026-03-18</depositionDate>
            <releaseDate>2026-05-29</releaseDate>
            <updateDate>2026-05-31</updateDate>
        </keyDates>
        <title>Membrane insertion of mitochondrial-encoded proteins regulates ribosome decoding speed</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0002-4609-4052</authorORCID>
            <firstName>Niels</firstName>
            <lastName>Fischer</lastName>
            <organization type="academic">Depatrment of Physical Biochemistry, MPI-NAT</organization>
            <street>Am Fassberg 11</street>
            <townOrCity>Goettingen</townOrCity>
            <stateOrProvince>Lower Saxony</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>37077</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0002-4609-4052</authorORCID>
            <firstName>Niels</firstName>
            <lastName>Fischer</lastName>
            <organization type="academic">Depatrment of Physical Biochemistry, MPI-NAT</organization>
            <street>Am Fassberg 11</street>
            <townOrCity>Goettingen</townOrCity>
            <country>Germany</country>
            <postOrZipCode>37077</postOrZipCode>
        </principalInvestigator>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-5661-5272</authorORCID>
            <firstName>Peter</firstName>
            <lastName>Rehling</lastName>
            <organization type="academic">Department of Cellular Biochemistry, University Medical Center Goettingen</organization>
            <street>Humboldtallee 23</street>
            <townOrCity>Goettingen</townOrCity>
            <stateOrProvince>Lower Saxony</stateOrProvince>
            <country>Germany</country>
            <postOrZipCode>37073</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author>Schöndorf T</author>
            <author authorORCID="0000-0001-9867-9493">Petrychenko V</author>
            <author>Kotan I</author>
            <author>Dahal D</author>
            <author>Napieraj N</author>
            <author>Cruz-Zaragoza LD</author>
            <author>Wang C</author>
            <author>Urbach O</author>
            <author>Gall T</author>
            <author>Dennerlein S</author>
            <author>Kramer G</author>
            <author authorORCID="0000-0002-4609-4052">Fischer N</author>
            <author authorORCID="0000-0001-5661-5272">Rehling P</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody>European Research Council (ERC)</fundingBody>
                <code>ERCAdG No. 101054637</code>
                <country>Germany</country>
            </grantReference>
            <grantReference>
                <fundingBody>German Research Foundation (DFG)</fundingBody>
                <code>SFB1565</code>
                <country>Germany</country>
            </grantReference>
            <grantReference>
                <fundingBody>Max Planck Society</fundingBody>
                <code>PR, NF</code>
                <country>Germany</country>
            </grantReference>
            <grantReference>
                <fundingBody>German Research Foundation (DFG)</fundingBody>
                <code>Germany’s Excellence Strategy - EXC  1199 2067/1- 390729940</code>
                <country>Germany</country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">3.5</datasetSize>
        <entryDOI>10.6019/EMPIAR-13386</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-55836</emdbEntry>
            <emdbEntry>EMD-55837</emdbEntry>
            <emdbEntry>EMD-54637</emdbEntry>
            <emdbEntry>EMD-54638</emdbEntry>
            <emdbEntry>EMD-55838</emdbEntry>
            <emdbEntry>EMD-54639</emdbEntry>
            <emdbEntry>EMD-54640</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Schöndorf T</author>
                    <author authorORCID="0000-0001-9867-9493" order="2">Petrychenko V</author>
                    <author authorORCID="0000-0001-9028-979X" order="3">Kotan I</author>
                    <author authorORCID="0009-0009-7280-2102" order="4">Dahal D</author>
                    <author authorORCID="0000-0003-3750-5179" order="5">Napieraj N</author>
                    <author authorORCID="0000-0001-9568-0245" order="6">Cruz-Zaragoza LD</author>
                    <author order="7">Wang C</author>
                    <author order="8">Urbach O</author>
                    <author order="9">Gall T</author>
                    <author order="10">Dennerlein S</author>
                    <author authorORCID="0000-0001-7552-8393" order="11">Kramer G</author>
                    <author authorORCID="0000-0002-4609-4052" order="12">Fischer N</author>
                    <author authorORCID="0000-0001-5661-5272" order="13">Rehling P</author>
                    <editor order="1"> </editor>
                    <title>Membrane insertion of mitochondrial-encoded proteins regulates ribosome decoding speed</title>
                    <journal>Nature structural &amp; molecular biology</journal>
                    <journalAbbreviation>Nat Struct Mol Biol</journalAbbreviation>
                    <country></country>
                    <issue>5</issue>
                    <volume>33</volume>
                    <firstPage>853</firstPage>
                    <lastPage>867</lastPage>
                    <year>2026</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/s41594-026-01803-w</externalReferences>
                    <externalReferences type="pubmed">42098403</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>Motion-corrected, dose-weighted micrographs</name>
        <directory>/data/data/Micrographs</directory>
        <category>micrographs - single frame</category>
        <headerFormat>MRC</headerFormat>
        <dataFormat>MRC</dataFormat>
        <numImagesOrTiltSeries>51805</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>4096</imageWidth>
            <pixelWidth>1.16</pixelWidth>
            <imageHeight>4096</imageHeight>
            <pixelHeight>1.16</pixelHeight>
        </dimensions>
        <details>Note: Micrographs were obtained from movie-stacks of 30-40 frames à ~1 e/A^2 by global motion-correction and dose-weighting using MotionCor2 in Relion.
- Micrographs .star-file: "micrographs.star"</details>
        <segmentationList/>
        <micrographsFilePattern>data/data/Micrographs/FoilHole_*_Fractions.mrc</micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>Shiny ribosome particles, obtained by Bayesian polishing in Relion</name>
        <directory>/data/data/Particles</directory>
        <category>picked particles - single frame - processed</category>
        <headerFormat>MRCS</headerFormat>
        <dataFormat>MRCS</dataFormat>
        <numImagesOrTiltSeries>533455</numImagesOrTiltSeries>
        <framesPerImage>1</framesPerImage>
        <voxelType>32 BIT FLOAT</voxelType>
        <dimensions>
            <imageWidth>400</imageWidth>
            <pixelWidth>1.16</pixelWidth>
            <imageHeight>400</imageHeight>
            <pixelHeight>1.16</pixelHeight>
        </dimensions>
        <details>Star-files of shiny particles:
- P (EMD-55836): "particles_P.star"
- AP (EMD-55837): "particles_AP.star"
- AP* (EMD-54637): "particles_APstar.star"
- H1 (EMD-54638): "particles_H1.star"
- H2 (EMD-55838): "particles_H2.star"
- open COX1-mtRNC-OXA1L/MITRAC (EMD-54639): "particles_COX1-mtRNC-OXA1LMITRAC_open.star"
- closed COX1-mtRNC-OXA1L/MITRAC (EMD-54640): "particles_COX1-mtRNC-OXA1LMITRAC_closed.star"
Masks used for the RELION focused classifications are located in data/data/Masks</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern>data/data/Particles/FoilHole_*_Fractions_shiny.mrcs</pickedParticlesFilePattern>
        <pickedParticlesDirectory>data/data/Particles</pickedParticlesDirectory>
    </imageSet>
</entry>
