<entry xmlns="http://pdbe.org/empiar" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://ftp.ebi.ac.uk/pub/databases/emtest/empiar/schema/empiar.xsd" accessionCode="EMPIAR-13418" schemaVersion="0.65" public="true">
    <admin>
        <currentStatus>REL</currentStatus>
        <keyDates>
            <depositionDate>2026-02-19</depositionDate>
            <releaseDate>2026-07-20</releaseDate>
            <updateDate>2026-07-20</updateDate>
        </keyDates>
        <title>Macaque green and red cone pigments</title>
        <correspondingAuthor private="true">
            <authorORCID>0000-0001-8498-4374</authorORCID>
            <firstName>Kota</firstName>
            <lastName>Katayama</lastName>
            <organization type="academic">Department of Life Science and Applied Chemistry, Nagoya Institute of Technology</organization>
            <street>Gokiso</street>
            <townOrCity>Showa, Nagoya</townOrCity>
            <stateOrProvince>Aichi</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>466-8555</postOrZipCode>
        </correspondingAuthor>
        <principalInvestigator private="true">
            <authorORCID>0000-0001-8498-4374</authorORCID>
            <firstName>Kota</firstName>
            <lastName>Katayama</lastName>
            <organization type="academic">Department of Life Science and Applied Chemistry, Nagoya Institute of Technology</organization>
            <street>Gokiso</street>
            <townOrCity>Showa, Nagoya</townOrCity>
            <stateOrProvince>Aichi</stateOrProvince>
            <country>Japan</country>
            <postOrZipCode>466-8555</postOrZipCode>
        </principalInvestigator>
        <authorsList>
            <author authorORCID="0009-0005-8250-4257">Ohashi S</author>
            <author authorORCID="0009-0009-7853-7055">Kojima A</author>
            <author authorORCID="0000-0002-8824-846X">Fukuda M</author>
            <author authorORCID="0000-0002-2817-1202">Kim S</author>
            <author authorORCID="0000-0002-1941-5535">Kato HE</author>
            <author authorORCID="0000-0002-4922-1344">Kandori H</author>
            <author authorORCID="0000-0001-8498-4374">Katayama K</author>
        </authorsList>
        <grantSupport>
            <grantReference>
                <fundingBody></fundingBody>
                <code></code>
                <country></country>
            </grantReference>
        </grantSupport>
        <datasetSize units="TB">8.4</datasetSize>
        <entryDOI>10.6019/EMPIAR-13418</entryDOI>
        <experimentType>EMDB</experimentType>
        <scale>molecule</scale>
    </admin>
    <crossReferences>
        <relatedEMDBEntries>
            <emdbEntry>EMD-64397</emdbEntry>
            <emdbEntry>EMD-64398</emdbEntry>
            <emdbEntry>EMD-64399</emdbEntry>
        </relatedEMDBEntries>
        <citationList>
            <universalCitation>
                <journalCitation published="true" preprint="false">
                    <author order="1">Wang X</author>
                    <author order="2">Chu H</author>
                    <author order="3">Lv M</author>
                    <author order="4">Zhang Z</author>
                    <author order="5">Qiu S</author>
                    <author authorORCID="0000-0002-5926-820X" order="6">Liu H</author>
                    <author authorORCID="0000-0002-4267-5298" order="7">Shen X</author>
                    <author order="8">Wang W</author>
                    <author authorORCID="0000-0001-8622-3907" order="9">Cai G</author>
                    <title>Structure of the intact ATM/Tel1 kinase</title>
                    <journal>Nature communications</journal>
                    <journalAbbreviation>Nat Commun</journalAbbreviation>
                    <country></country>
                    <volume>7</volume>
                    <year>2016</year>
                    <language>English</language>
                    <externalReferences type="doi">10.1038/ncomms11655</externalReferences>
                    <externalReferences type="pubmed">27229179</externalReferences>
                </journalCitation>
            </universalCitation>
        </citationList>
    </crossReferences>
    <imageSet>
        <name>macaque green cone pigment with Q114N</name>
        <directory>/data/monkey_green_cone_pigment_with_Q114N</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>7958</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- Please ignore the pixel size in the header (1.00 Å/px); use 0.83 Å/px.
- Accelerating voltage: 300 kV
- Spherical aberration: 2.7 mm
- Total exposure dose: 47.5 e/A^2
- Please use "movie_gain.mrc" as a gain reference with flipping along Y for CryoSPARC</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>macaque red cone pigment with Q114N</name>
        <directory>/data/monkey_red_cone_pigment_with_Q114N</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>15824</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- Please ignore the pixel size in the header (1.00 Å/px); use 0.83 Å/px.
- Accelerating voltage: 300 kV
- Spherical aberration: 2.7 mm
- Total exposure dose: 46.9 e/A^2
- Please use "movie_gain.mrc" as a gain reference with flipping along Y for CryoSPARC</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
    <imageSet>
        <name>macaque green cone pigment wild type</name>
        <directory>/data/monkey_green_cone_pigment_wild_type</directory>
        <category>micrographs - multiframe</category>
        <headerFormat>TIFF</headerFormat>
        <dataFormat>TIFF</dataFormat>
        <numImagesOrTiltSeries>15558</numImagesOrTiltSeries>
        <framesPerImage>48</framesPerImage>
        <frameRange>
            <frameRangeMin>1</frameRangeMin>
            <frameRangeMax>48</frameRangeMax>
        </frameRange>
        <voxelType>UNSIGNED BYTE</voxelType>
        <dimensions>
            <imageWidth>5760</imageWidth>
            <pixelWidth>0.83</pixelWidth>
            <imageHeight>4092</imageHeight>
            <pixelHeight>0.83</pixelHeight>
        </dimensions>
        <details>- Please ignore the pixel size in the header (1.00 Å/px); use 0.83 Å/px.
- Accelerating voltage: 300 kV
- Spherical aberration: 2.7 mm
- Total exposure dose: 46.6 e/A^2
- Please use "movie_gain.mrc" as a gain reference with flipping along Y for CryoSPARC</details>
        <segmentationList/>
        <micrographsFilePattern></micrographsFilePattern>
        <pickedParticlesFilePattern></pickedParticlesFilePattern>
        <pickedParticlesDirectory></pickedParticlesDirectory>
    </imageSet>
</entry>
