{"schema_version":"1.0","pdb_id":"6NIL","generated_at":"2026-09-07T17:50:41Z","status":"complete","coordinate_system":{"reference":"PDB_INSTANCE","index_base":1,"end_inclusive":true},"sources":{"sequence_coordinates_api":"https://sequence-coordinates.rcsb.org/graphql","annotation_collections":["UNIPROT","PDB_ENTITY","PDB_INSTANCE","PDB_INTERFACE"]},"chains":[{"instance_id":"6NIL.L","entity_id":"3","label_asym_id":"L","auth_asym_id":"L","description":"Virion infectivity factor","polymer_type":"polypeptide(L)","sequence":{"value":"MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDEASEGSQIKPPLPSVRKLTEDRWNK","length":138},"alignments":[{"source":"UNIPROT","target_id":"P12504","target_sequence":"MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDCFSESAIRNTILGRIVSPRCEYQAGHNKVGSLQYLALAALIKPKQIKPPLPSVRKLTEDRWNKPQKTKGHRGSHTMNGH","query_coverage":0.9565217391304348,"query_length":138,"target_coverage":0.6875,"target_length":192,"orientation":null,"regions":[{"query_begin":1,"query_end":113,"target_begin":1,"target_end":113,"exon_shift":null},{"query_begin":120,"query_end":138,"target_begin":158,"target_end":176,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":5,"end":13,"feature_id":"AC1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":5,"original_end":13},{"begin":5,"end":13,"feature_id":"AC2","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":5,"original_end":13},{"begin":17,"end":25,"feature_id":"HELX_P58","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":17,"original_end":25},{"begin":55,"end":59,"feature_id":"AC1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":55,"original_end":59},{"begin":62,"end":68,"feature_id":"AC1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":62,"original_end":68},{"begin":83,"end":90,"feature_id":"AC1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":83,"original_end":90},{"begin":83,"end":90,"feature_id":"AC2","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":83,"original_end":90},{"begin":95,"end":97,"feature_id":"AC2","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":95,"original_end":97},{"begin":99,"end":108,"feature_id":"HELX_P59","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":99,"original_end":108},{"begin":127,"end":132,"feature_id":"HELX_P60","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PROMOTIF","original_begin":127,"original_end":132}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":4,"end":4,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":4,"original_end":null,"values":[1.0]},{"begin":10,"end":10,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":10,"original_end":null,"values":[2.0]},{"begin":17,"end":17,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":17,"original_end":null,"values":[1.0]},{"begin":20,"end":20,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":20,"original_end":null,"values":[1.0]},{"begin":23,"end":23,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":23,"original_end":null,"values":[5.0]},{"begin":57,"end":57,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":57,"original_end":null,"values":[1.0]},{"begin":64,"end":64,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":64,"original_end":null,"values":[2.0]},{"begin":66,"end":66,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":66,"original_end":null,"values":[1.0]},{"begin":74,"end":75,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":74,"original_end":null,"values":[1.0,1.0]},{"begin":80,"end":81,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":80,"original_end":null,"values":[1.0,1.0]},{"begin":87,"end":87,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":87,"original_end":null,"values":[1.0]},{"begin":98,"end":99,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":98,"original_end":null,"values":[2.0,2.0]},{"begin":106,"end":106,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":106,"original_end":null,"values":[1.0]},{"begin":111,"end":112,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":111,"original_end":null,"values":[1.0,1.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":1,"end":114,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":1,"original_end":null,"values":[0.451,0.24,0.157,0.278,0.334,0.438,0.426,0.484,0.489,0.476,0.513,0.31,0.495,0.187,0.457,0.409,0.513,0.477,0.479,0.463,0.511,0.559,0.453,0.492,0.413,0.459,0.47,0.525,0.444,0.381,0.294,0.32,0.493,0.373,0.466,0.458,0.352,0.5,0.354,0.359,0.308,-0.03,0.088,0.238,0.404,0.418,0.441,0.377,0.453,0.525,0.495,0.497,0.466,0.357,0.463,0.564,0.431,0.451,0.326,0.408,0.21,0.246,0.548,0.423,0.471,0.474,0.476,0.502,0.523,0.5,0.494,0.482,0.47,0.497,0.5,0.411,0.361,0.316,0.47,0.572,0.426,0.414,0.541,0.586,0.444,0.507,0.485,0.355,0.372,0.363,0.333,0.101,0.462,0.505,0.523,0.384,0.462,0.44,0.129,0.343,0.29,0.355,0.494,0.312,0.328,0.331,0.441,0.337,0.326,0.368,0.234,0.404,0.251,0.517]},{"begin":120,"end":138,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":120,"original_end":null,"values":[0.374,0.343,0.327,0.42,0.575,0.443,0.51,0.377,0.464,0.405,0.337,0.427,0.515,0.275,0.346,0.402,0.447,0.388,0.255]}]},{"key":"cis_peptide","label":"CIS-PEPTIDE","kind":"point","features":[{"begin":111,"end":112,"feature_id":"7","type":"CIS_PEPTIDE","name":"cis-peptide","description":"cis-peptide bond in model 1 with omega angle 1.80","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":111,"original_end":112},{"begin":122,"end":123,"feature_id":"8","type":"CIS_PEPTIDE","name":"cis-peptide","description":"cis-peptide bond in model 1 with omega angle -12.12","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":122,"original_end":123}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":1,"end":114,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":1,"original_end":null,"values":[0,0,0,0,0,0,0,0,0,0,0,0,0,3.87,0,0,0,1.61,0,0,0,0,0,0,2.95,0,0,0,0,0,0,0,0,0,0.26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32,0,3.22,0,1.88,0,0,0,0,0,0,0,0,4.22,0,5.12,0,0,0,0,0,0,0,0,0,0,0,0,0,4.98,0,0.5,4.55,0.85,5.32,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26,0,0,0,0,0,0,0,0,0,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":134,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-0.38,-0.12,0.17,0.17,1.13,0.84,0.73,0.48,-0.23,-0.23,-1.09,-1.07,-0.78,-1.68,-1.79,-0.87,-0.61,-0.54,-1.4,-1.37,-1.08,-1.12,-0.19,0.22,-0.7,-1.6,-0.97,-1.04,-1.08,-1.39,-0.93,-1.58,-1.99,-1.84,-1.77,-2.11,-2.07,-1.77,-1.74,-2.44,-2.48,-2.41,-1.56,-1.29,-1.23,-1.23,-0.68,-0.96,-0.07,-0.07,0.79,0.24,-0.06,0.23,0.19,0.14,0.97,0.97,1.07,0.57,0.47,0.76,0.51,1.37,0.59,0.04,-0.5,-0.81,-1.23,-1.48,-1.48,-1.79,-1.79,-1.48,-1.79,-1.79,-0.93,-0.52,0.37,0.08,0.33,-0.59,-0.98,-1.02,-1.48,-2.09,-2.09,-2.67,-2.67,-2.1,-1.99,-1.73,-1.69,-0.77,-0.42,-0.72,-1.03,-0.22,-0.19,-0.16,0.44,0.48,-0.09,0.02,0.02,0.02,-0.2,-0.79,-0.82,-1.29,-1.02,-1.27,-1.08,-1.12,-0.91,-1.29,-0.78,-0.57,-0.61,-0.06,-0.17,-1.1,-0.24,-0.14,-0.36,-1.17,-1.49,-1.5,-2.36,-2.29]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":138,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.6,0.57,0.47,0.41,0.36,0.27,0.22,0.12,0.1,0.07,0.03,0.04,0.04,0.02,0.01,0.04,0.03,0.05,0.05,0.04,0.04,0.07,0.07,0.11,0.1,0.12,0.15,0.08,0.08,0.04,0.05,0.1,0.09,0.05,0.09,0.12,0.11,0.12,0.14,0.17,0.18,0.25,0.25,0.26,0.2,0.21,0.14,0.16,0.2,0.28,0.37,0.34,0.34,0.26,0.31,0.24,0.25,0.25,0.18,0.1,0.1,0.1,0.1,0.1,0.1,0.15,0.15,0.21,0.12,0.18,0.12,0.12,0.15,0.15,0.17,0.21,0.19,0.2,0.12,0.17,0.23,0.22,0.27,0.19,0.2,0.19,0.2,0.16,0.16,0.27,0.28,0.29,0.27,0.27,0.28,0.27,0.21,0.3,0.23,0.33,0.28,0.22,0.23,0.25,0.32,0.32,0.32,0.32,0.37,0.38,0.29,0.27,0.37,0.43,0.35,0.37,0.44,0.44,0.43,0.49,0.41,0.48,0.55,0.55,0.55,0.5,0.5,0.49,0.52,0.55,0.58,0.68,0.72,0.72,0.73,0.83,0.84,0.87]},{"begin":127,"end":138,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Disordered","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":176}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":138,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.05,0.06,0.07,0.08,0.09,0.1,0.13,0.15,0.18,0.19,0.2,0.21,0.22,0.21,0.21,0.21,0.21,0.21,0.21,0.2,0.21,0.22,0.22,0.23,0.24,0.25,0.25,0.24,0.24,0.24,0.24,0.24,0.24,0.24,0.23,0.22,0.2,0.2,0.19,0.17,0.16,0.16,0.15,0.15,0.15,0.15,0.16,0.18,0.19,0.21,0.23,0.25,0.27,0.29,0.32,0.34,0.36,0.36,0.38,0.38,0.38,0.39,0.4,0.4,0.4,0.38,0.36,0.35,0.34,0.33,0.33,0.32,0.31,0.31,0.31,0.32,0.33,0.34,0.36,0.38,0.39,0.4,0.4,0.4,0.4,0.39,0.38,0.38,0.36,0.35,0.33,0.33,0.34,0.35,0.36,0.37,0.38,0.4,0.42,0.43,0.41,0.38,0.37,0.36,0.35,0.33,0.33,0.33,0.33,0.34,0.34,0.35,0.36,0.38,0.39,0.4,0.41,0.42,0.42,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.41]}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":1,"end":138,"feature_id":"e6nilL1","type":"ECOD","name":"Parvo_coat","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"ECOD","original_begin":1,"original_end":138}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":1,"end":113,"feature_id":"PRO_0000441079","type":"CHAIN","name":null,"description":"p17","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":1,"original_end":113},{"begin":1,"end":113,"feature_id":"PRO_0000042762","type":"CHAIN","name":null,"description":"Virion infectivity factor","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":1,"original_end":113},{"begin":120,"end":138,"feature_id":"PRO_0000042762","type":"CHAIN","name":null,"description":"Virion infectivity factor","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176},{"begin":120,"end":138,"feature_id":"PRO_0000441080","type":"CHAIN","name":null,"description":"p7","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":5,"end":6,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"44% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":5,"original_end":6},{"begin":12,"end":13,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":12,"original_end":13},{"begin":15,"end":15,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Strongly reduced interaction with host APOBEC3F without affecting interaction with host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":15,"original_end":15},{"begin":16,"end":18,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"29% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":16,"original_end":18},{"begin":23,"end":24,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"14% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":23,"original_end":24},{"begin":29,"end":31,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"59% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":29,"original_end":31},{"begin":33,"end":34,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"35% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":33,"original_end":34},{"begin":38,"end":40,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"94% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":38,"original_end":40},{"begin":42,"end":43,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to ubiquitinate host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":42,"original_end":43},{"begin":43,"end":44,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"95% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":43,"original_end":44},{"begin":50,"end":50,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Strongly reduced interaction with host APOBEC3G and APOBEC3F.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":50,"original_end":50},{"begin":53,"end":54,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"39% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":53,"original_end":54},{"begin":58,"end":59,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"45% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":58,"original_end":59},{"begin":69,"end":70,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"97% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":69,"original_end":70},{"begin":73,"end":74,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect onviral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":73,"original_end":74},{"begin":79,"end":80,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with host APOBEC3F. Does not affect interaction with host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":79,"original_end":80},{"begin":80,"end":81,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"19% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":80,"original_end":81},{"begin":86,"end":87,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"42% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":86,"original_end":87},{"begin":90,"end":92,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":90,"original_end":92},{"begin":92,"end":93,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Impaired ability to mediate ubiquitination of host APOBEC3H.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":92,"original_end":93},{"begin":97,"end":98,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"27% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":97,"original_end":98},{"begin":105,"end":107,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"98% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":105,"original_end":107},{"begin":108,"end":108,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Complete loss of interaction with CUL5.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":108,"original_end":108},{"begin":111,"end":112,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"93% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":111,"original_end":112},{"begin":120,"end":120,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":158},{"begin":120,"end":122,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"9% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":160},{"begin":122,"end":122,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"33% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":160,"original_end":160},{"begin":123,"end":123,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"27% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":161},{"begin":123,"end":125,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"97% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":163},{"begin":123,"end":126,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"88% loss of viral infectivity. Strongly decreased interaction with host CUL5.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":164},{"begin":124,"end":124,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":162,"original_end":162},{"begin":125,"end":125,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"26% loss of viral infectivity. Does not affect interaction with host ELOC.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":163,"original_end":163},{"begin":126,"end":126,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"63% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":164,"original_end":164},{"begin":127,"end":127,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"67% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":165},{"begin":128,"end":128,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"20% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":166,"original_end":166},{"begin":131,"end":131,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with host ELOC.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":169,"original_end":169},{"begin":131,"end":132,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"42% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":169,"original_end":170}]},{"key":"other_angle_outliers","label":"ANGLE_OUTLIERS","kind":"numeric_series","features":[{"begin":83,"end":83,"feature_id":"ANGLE_OUTLIERS","type":"ANGLE_OUTLIERS","name":"ANGLE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[1.0]}]},{"key":"other_artifact","label":"ARTIFACT","kind":"range","features":[{"begin":114,"end":119,"feature_id":"range_feature_2","type":"ARTIFACT","name":"linker","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"PDB","original_begin":114,"original_end":119}]},{"key":"other_compositionally_biased_region","label":"COMPOSITIONALLY_BIASED_REGION","kind":"point","features":[{"begin":138,"end":138,"feature_id":null,"type":"COMPOSITIONALLY_BIASED_REGION","name":null,"description":"Basic residues","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":176,"original_end":176}]},{"key":"other_modified_residue","label":"MODIFIED_RESIDUE","kind":"point","features":[{"begin":96,"end":96,"feature_id":null,"type":"MODIFIED_RESIDUE","name":null,"description":"Phosphothreonine; by host MAP4K1","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":96,"original_end":96},{"begin":127,"end":127,"feature_id":null,"type":"MODIFIED_RESIDUE","name":null,"description":"Phosphoserine; by host MAP4K1","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":165}]},{"key":"other_plane_outliers","label":"PLANE_OUTLIERS","kind":"numeric_series","features":[{"begin":17,"end":17,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":17,"original_end":null,"values":[1.0]},{"begin":23,"end":23,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":23,"original_end":null,"values":[1.0]},{"begin":33,"end":33,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":33,"original_end":null,"values":[1.0]}]},{"key":"other_region_of_interest","label":"REGION_OF_INTEREST","kind":"range","features":[{"begin":14,"end":17,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F; F1-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":14,"original_end":17},{"begin":40,"end":44,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3G; G-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":40,"original_end":44},{"begin":54,"end":72,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F and APOBEC3G; FG-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":54,"original_end":72},{"begin":74,"end":79,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F; F2-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":74,"original_end":79},{"begin":75,"end":113,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"RNA-binding","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":75,"original_end":113},{"begin":120,"end":126,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Multimerization","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":164},{"begin":120,"end":138,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"SOCS box-like","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176},{"begin":133,"end":134,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Membrane association","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":171,"original_end":172}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"range","features":[{"begin":90,"end":93,"feature_id":null,"type":"SEQUENCE_VARIANT","name":null,"description":"In strain: Clinical isolate; from an asymptomatic patient; Vif is mislocalized to the nucleus and non functional.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":90,"original_end":93}]},{"key":"other_short_sequence_motif","label":"SHORT_SEQUENCE_MOTIF","kind":"range","features":[{"begin":108,"end":113,"feature_id":null,"type":"SHORT_SEQUENCE_MOTIF","name":null,"description":"HCCH motif","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":108,"original_end":113}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":115,"end":119,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.L","provenance_source":"PDB","original_begin":115,"original_end":119}]}]},{"instance_id":"6NIL.I","entity_id":"3","label_asym_id":"I","auth_asym_id":"I","description":"Virion infectivity factor","polymer_type":"polypeptide(L)","sequence":{"value":"MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDEASEGSQIKPPLPSVRKLTEDRWNK","length":138},"alignments":[{"source":"UNIPROT","target_id":"P12504","target_sequence":"MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDCFSESAIRNTILGRIVSPRCEYQAGHNKVGSLQYLALAALIKPKQIKPPLPSVRKLTEDRWNKPQKTKGHRGSHTMNGH","query_coverage":0.9565217391304348,"query_length":138,"target_coverage":0.6875,"target_length":192,"orientation":null,"regions":[{"query_begin":1,"query_end":113,"target_begin":1,"target_end":113,"exon_shift":null},{"query_begin":120,"query_end":138,"target_begin":158,"target_end":176,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":5,"end":13,"feature_id":"AB6","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":5,"original_end":13},{"begin":5,"end":13,"feature_id":"AB5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":5,"original_end":13},{"begin":17,"end":25,"feature_id":"HELX_P43","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":17,"original_end":25},{"begin":55,"end":59,"feature_id":"AB5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":55,"original_end":59},{"begin":62,"end":68,"feature_id":"AB5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":62,"original_end":68},{"begin":83,"end":90,"feature_id":"AB6","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":83,"original_end":90},{"begin":83,"end":90,"feature_id":"AB5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":83,"original_end":90},{"begin":95,"end":97,"feature_id":"AB6","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":95,"original_end":97},{"begin":99,"end":108,"feature_id":"HELX_P44","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":99,"original_end":108},{"begin":127,"end":132,"feature_id":"HELX_P45","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PROMOTIF","original_begin":127,"original_end":132}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":4,"end":4,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":4,"original_end":null,"values":[1.0]},{"begin":10,"end":10,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":10,"original_end":null,"values":[2.0]},{"begin":17,"end":17,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":17,"original_end":null,"values":[1.0]},{"begin":20,"end":20,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":20,"original_end":null,"values":[1.0]},{"begin":23,"end":23,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":23,"original_end":null,"values":[5.0]},{"begin":57,"end":57,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":57,"original_end":null,"values":[3.0]},{"begin":64,"end":64,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":64,"original_end":null,"values":[2.0]},{"begin":66,"end":66,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":66,"original_end":null,"values":[1.0]},{"begin":74,"end":75,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":74,"original_end":null,"values":[1.0,1.0]},{"begin":80,"end":81,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":80,"original_end":null,"values":[1.0,1.0]},{"begin":87,"end":87,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":87,"original_end":null,"values":[1.0]},{"begin":98,"end":99,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":98,"original_end":null,"values":[2.0,2.0]},{"begin":106,"end":106,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":106,"original_end":null,"values":[1.0]},{"begin":111,"end":112,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":111,"original_end":null,"values":[1.0,1.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":1,"end":114,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":1,"original_end":null,"values":[0.424,0.268,0.156,0.266,0.334,0.445,0.416,0.463,0.474,0.465,0.516,0.326,0.476,0.171,0.461,0.441,0.527,0.478,0.489,0.45,0.473,0.559,0.468,0.485,0.409,0.485,0.481,0.519,0.448,0.389,0.282,0.315,0.49,0.367,0.488,0.447,0.341,0.519,0.327,0.359,0.275,-0.031,0.088,0.218,0.388,0.411,0.428,0.384,0.456,0.534,0.459,0.51,0.46,0.398,0.482,0.571,0.413,0.445,0.294,0.42,0.199,0.247,0.536,0.429,0.476,0.488,0.479,0.516,0.511,0.505,0.515,0.473,0.481,0.493,0.495,0.357,0.354,0.362,0.48,0.556,0.432,0.391,0.543,0.578,0.402,0.522,0.482,0.354,0.351,0.348,0.348,0.098,0.452,0.507,0.52,0.39,0.478,0.425,0.128,0.376,0.312,0.313,0.493,0.317,0.364,0.36,0.46,0.312,0.303,0.382,0.24,0.423,0.255,0.532]},{"begin":120,"end":138,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":120,"original_end":null,"values":[0.361,0.355,0.336,0.427,0.556,0.439,0.482,0.379,0.454,0.41,0.388,0.446,0.476,0.272,0.33,0.41,0.421,0.389,0.296]}]},{"key":"cis_peptide","label":"CIS-PEPTIDE","kind":"point","features":[{"begin":111,"end":112,"feature_id":"5","type":"CIS_PEPTIDE","name":"cis-peptide","description":"cis-peptide bond in model 1 with omega angle 1.80","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":111,"original_end":112},{"begin":122,"end":123,"feature_id":"6","type":"CIS_PEPTIDE","name":"cis-peptide","description":"cis-peptide bond in model 1 with omega angle -12.12","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":122,"original_end":123}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":1,"end":114,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":1,"original_end":null,"values":[0,0,0,0,0,0,0,0,0,0,0,0,0,3.92,0,0,0,1.61,0,0,0,0,0,0,2.95,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.91,1.32,0,2.68,0,1.34,0,0,0,0,0,0,0,0,5.57,0,5.58,0,0,0,0,0,0,0,0,0,0,0,0,0,4.98,0,0,3.22,1.05,4.89,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53,0,0,0,0,0,0,0,0,0,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":134,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-0.38,-0.12,0.17,0.17,1.13,0.84,0.73,0.48,-0.23,-0.23,-1.09,-1.07,-0.78,-1.68,-1.79,-0.87,-0.61,-0.54,-1.4,-1.37,-1.08,-1.12,-0.19,0.22,-0.7,-1.6,-0.97,-1.04,-1.08,-1.39,-0.93,-1.58,-1.99,-1.84,-1.77,-2.11,-2.07,-1.77,-1.74,-2.44,-2.48,-2.41,-1.56,-1.29,-1.23,-1.23,-0.68,-0.96,-0.07,-0.07,0.79,0.24,-0.06,0.23,0.19,0.14,0.97,0.97,1.07,0.57,0.47,0.76,0.51,1.37,0.59,0.04,-0.5,-0.81,-1.23,-1.48,-1.48,-1.79,-1.79,-1.48,-1.79,-1.79,-0.93,-0.52,0.37,0.08,0.33,-0.59,-0.98,-1.02,-1.48,-2.09,-2.09,-2.67,-2.67,-2.1,-1.99,-1.73,-1.69,-0.77,-0.42,-0.72,-1.03,-0.22,-0.19,-0.16,0.44,0.48,-0.09,0.02,0.02,0.02,-0.2,-0.79,-0.82,-1.29,-1.02,-1.27,-1.08,-1.12,-0.91,-1.29,-0.78,-0.57,-0.61,-0.06,-0.17,-1.1,-0.24,-0.14,-0.36,-1.17,-1.49,-1.5,-2.36,-2.29]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":138,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.6,0.57,0.47,0.41,0.36,0.27,0.22,0.12,0.1,0.07,0.03,0.04,0.04,0.02,0.01,0.04,0.03,0.05,0.05,0.04,0.04,0.07,0.07,0.11,0.1,0.12,0.15,0.08,0.08,0.04,0.05,0.1,0.09,0.05,0.09,0.12,0.11,0.12,0.14,0.17,0.18,0.25,0.25,0.26,0.2,0.21,0.14,0.16,0.2,0.28,0.37,0.34,0.34,0.26,0.31,0.24,0.25,0.25,0.18,0.1,0.1,0.1,0.1,0.1,0.1,0.15,0.15,0.21,0.12,0.18,0.12,0.12,0.15,0.15,0.17,0.21,0.19,0.2,0.12,0.17,0.23,0.22,0.27,0.19,0.2,0.19,0.2,0.16,0.16,0.27,0.28,0.29,0.27,0.27,0.28,0.27,0.21,0.3,0.23,0.33,0.28,0.22,0.23,0.25,0.32,0.32,0.32,0.32,0.37,0.38,0.29,0.27,0.37,0.43,0.35,0.37,0.44,0.44,0.43,0.49,0.41,0.48,0.55,0.55,0.55,0.5,0.5,0.49,0.52,0.55,0.58,0.68,0.72,0.72,0.73,0.83,0.84,0.87]},{"begin":127,"end":138,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Disordered","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":176}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":138,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.05,0.06,0.07,0.08,0.09,0.1,0.13,0.15,0.18,0.19,0.2,0.21,0.22,0.21,0.21,0.21,0.21,0.21,0.21,0.2,0.21,0.22,0.22,0.23,0.24,0.25,0.25,0.24,0.24,0.24,0.24,0.24,0.24,0.24,0.23,0.22,0.2,0.2,0.19,0.17,0.16,0.16,0.15,0.15,0.15,0.15,0.16,0.18,0.19,0.21,0.23,0.25,0.27,0.29,0.32,0.34,0.36,0.36,0.38,0.38,0.38,0.39,0.4,0.4,0.4,0.38,0.36,0.35,0.34,0.33,0.33,0.32,0.31,0.31,0.31,0.32,0.33,0.34,0.36,0.38,0.39,0.4,0.4,0.4,0.4,0.39,0.38,0.38,0.36,0.35,0.33,0.33,0.34,0.35,0.36,0.37,0.38,0.4,0.42,0.43,0.41,0.38,0.37,0.36,0.35,0.33,0.33,0.33,0.33,0.34,0.34,0.35,0.36,0.38,0.39,0.4,0.41,0.42,0.42,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.41]}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":1,"end":138,"feature_id":"e6nilI1","type":"ECOD","name":"Parvo_coat","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"ECOD","original_begin":1,"original_end":138}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":1,"end":113,"feature_id":"PRO_0000441079","type":"CHAIN","name":null,"description":"p17","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":1,"original_end":113},{"begin":1,"end":113,"feature_id":"PRO_0000042762","type":"CHAIN","name":null,"description":"Virion infectivity factor","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":1,"original_end":113},{"begin":120,"end":138,"feature_id":"PRO_0000042762","type":"CHAIN","name":null,"description":"Virion infectivity factor","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176},{"begin":120,"end":138,"feature_id":"PRO_0000441080","type":"CHAIN","name":null,"description":"p7","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":5,"end":6,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"44% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":5,"original_end":6},{"begin":12,"end":13,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":12,"original_end":13},{"begin":15,"end":15,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Strongly reduced interaction with host APOBEC3F without affecting interaction with host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":15,"original_end":15},{"begin":16,"end":18,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"29% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":16,"original_end":18},{"begin":23,"end":24,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"14% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":23,"original_end":24},{"begin":29,"end":31,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"59% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":29,"original_end":31},{"begin":33,"end":34,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"35% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":33,"original_end":34},{"begin":38,"end":40,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"94% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":38,"original_end":40},{"begin":42,"end":43,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to ubiquitinate host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":42,"original_end":43},{"begin":43,"end":44,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"95% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":43,"original_end":44},{"begin":50,"end":50,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Strongly reduced interaction with host APOBEC3G and APOBEC3F.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":50,"original_end":50},{"begin":53,"end":54,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"39% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":53,"original_end":54},{"begin":58,"end":59,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"45% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":58,"original_end":59},{"begin":69,"end":70,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"97% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":69,"original_end":70},{"begin":73,"end":74,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect onviral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":73,"original_end":74},{"begin":79,"end":80,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with host APOBEC3F. Does not affect interaction with host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":79,"original_end":80},{"begin":80,"end":81,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"19% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":80,"original_end":81},{"begin":86,"end":87,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"42% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":86,"original_end":87},{"begin":90,"end":92,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":90,"original_end":92},{"begin":92,"end":93,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Impaired ability to mediate ubiquitination of host APOBEC3H.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":92,"original_end":93},{"begin":97,"end":98,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"27% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":97,"original_end":98},{"begin":105,"end":107,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"98% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":105,"original_end":107},{"begin":108,"end":108,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Complete loss of interaction with CUL5.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":108,"original_end":108},{"begin":111,"end":112,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"93% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":111,"original_end":112},{"begin":120,"end":120,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":158},{"begin":120,"end":122,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"9% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":160},{"begin":122,"end":122,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"33% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":160,"original_end":160},{"begin":123,"end":123,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"27% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":161},{"begin":123,"end":125,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"97% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":163},{"begin":123,"end":126,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"88% loss of viral infectivity. Strongly decreased interaction with host CUL5.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":164},{"begin":124,"end":124,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":162,"original_end":162},{"begin":125,"end":125,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"26% loss of viral infectivity. Does not affect interaction with host ELOC.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":163,"original_end":163},{"begin":126,"end":126,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"63% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":164,"original_end":164},{"begin":127,"end":127,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"67% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":165},{"begin":128,"end":128,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"20% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":166,"original_end":166},{"begin":131,"end":131,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with host ELOC.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":169,"original_end":169},{"begin":131,"end":132,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"42% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":169,"original_end":170}]},{"key":"other_angle_outliers","label":"ANGLE_OUTLIERS","kind":"numeric_series","features":[{"begin":83,"end":83,"feature_id":"ANGLE_OUTLIERS","type":"ANGLE_OUTLIERS","name":"ANGLE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[1.0]}]},{"key":"other_artifact","label":"ARTIFACT","kind":"range","features":[{"begin":114,"end":119,"feature_id":"range_feature_2","type":"ARTIFACT","name":"linker","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"PDB","original_begin":114,"original_end":119}]},{"key":"other_compositionally_biased_region","label":"COMPOSITIONALLY_BIASED_REGION","kind":"point","features":[{"begin":138,"end":138,"feature_id":null,"type":"COMPOSITIONALLY_BIASED_REGION","name":null,"description":"Basic residues","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":176,"original_end":176}]},{"key":"other_modified_residue","label":"MODIFIED_RESIDUE","kind":"point","features":[{"begin":96,"end":96,"feature_id":null,"type":"MODIFIED_RESIDUE","name":null,"description":"Phosphothreonine; by host MAP4K1","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":96,"original_end":96},{"begin":127,"end":127,"feature_id":null,"type":"MODIFIED_RESIDUE","name":null,"description":"Phosphoserine; by host MAP4K1","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":165}]},{"key":"other_plane_outliers","label":"PLANE_OUTLIERS","kind":"numeric_series","features":[{"begin":17,"end":17,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":17,"original_end":null,"values":[1.0]},{"begin":23,"end":23,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":23,"original_end":null,"values":[1.0]},{"begin":33,"end":33,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":33,"original_end":null,"values":[1.0]}]},{"key":"other_region_of_interest","label":"REGION_OF_INTEREST","kind":"range","features":[{"begin":14,"end":17,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F; F1-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":14,"original_end":17},{"begin":40,"end":44,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3G; G-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":40,"original_end":44},{"begin":54,"end":72,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F and APOBEC3G; FG-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":54,"original_end":72},{"begin":74,"end":79,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F; F2-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":74,"original_end":79},{"begin":75,"end":113,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"RNA-binding","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":75,"original_end":113},{"begin":120,"end":126,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Multimerization","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":164},{"begin":120,"end":138,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"SOCS box-like","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176},{"begin":133,"end":134,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Membrane association","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":171,"original_end":172}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"range","features":[{"begin":90,"end":93,"feature_id":null,"type":"SEQUENCE_VARIANT","name":null,"description":"In strain: Clinical isolate; from an asymptomatic patient; Vif is mislocalized to the nucleus and non functional.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":90,"original_end":93}]},{"key":"other_short_sequence_motif","label":"SHORT_SEQUENCE_MOTIF","kind":"range","features":[{"begin":108,"end":113,"feature_id":null,"type":"SHORT_SEQUENCE_MOTIF","name":null,"description":"HCCH motif","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":108,"original_end":113}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":115,"end":119,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.I","provenance_source":"PDB","original_begin":115,"original_end":119}]}]},{"instance_id":"6NIL.F","entity_id":"3","label_asym_id":"F","auth_asym_id":"F","description":"Virion infectivity factor","polymer_type":"polypeptide(L)","sequence":{"value":"MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDEASEGSQIKPPLPSVRKLTEDRWNK","length":138},"alignments":[{"source":"UNIPROT","target_id":"P12504","target_sequence":"MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDCFSESAIRNTILGRIVSPRCEYQAGHNKVGSLQYLALAALIKPKQIKPPLPSVRKLTEDRWNKPQKTKGHRGSHTMNGH","query_coverage":0.9565217391304348,"query_length":138,"target_coverage":0.6875,"target_length":192,"orientation":null,"regions":[{"query_begin":1,"query_end":113,"target_begin":1,"target_end":113,"exon_shift":null},{"query_begin":120,"query_end":138,"target_begin":158,"target_end":176,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":5,"end":13,"feature_id":"AB1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":5,"original_end":13},{"begin":5,"end":13,"feature_id":"AA9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":5,"original_end":13},{"begin":17,"end":25,"feature_id":"HELX_P28","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":17,"original_end":25},{"begin":55,"end":59,"feature_id":"AA9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":55,"original_end":59},{"begin":62,"end":68,"feature_id":"AA9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":62,"original_end":68},{"begin":83,"end":90,"feature_id":"AB1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":83,"original_end":90},{"begin":83,"end":90,"feature_id":"AA9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":83,"original_end":90},{"begin":95,"end":97,"feature_id":"AB1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":95,"original_end":97},{"begin":99,"end":108,"feature_id":"HELX_P29","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":99,"original_end":108},{"begin":127,"end":132,"feature_id":"HELX_P30","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PROMOTIF","original_begin":127,"original_end":132}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":4,"end":4,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":4,"original_end":null,"values":[1.0]},{"begin":10,"end":10,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":10,"original_end":null,"values":[2.0]},{"begin":17,"end":17,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":17,"original_end":null,"values":[1.0]},{"begin":20,"end":20,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":20,"original_end":null,"values":[1.0]},{"begin":23,"end":23,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":23,"original_end":null,"values":[5.0]},{"begin":57,"end":57,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":57,"original_end":null,"values":[1.0]},{"begin":64,"end":64,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":64,"original_end":null,"values":[2.0]},{"begin":66,"end":66,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":66,"original_end":null,"values":[1.0]},{"begin":74,"end":75,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":74,"original_end":null,"values":[1.0,1.0]},{"begin":80,"end":81,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":80,"original_end":null,"values":[1.0,1.0]},{"begin":87,"end":87,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":87,"original_end":null,"values":[1.0]},{"begin":98,"end":99,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":98,"original_end":null,"values":[2.0,2.0]},{"begin":106,"end":106,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":106,"original_end":null,"values":[1.0]},{"begin":111,"end":112,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":111,"original_end":null,"values":[1.0,1.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":1,"end":114,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":1,"original_end":null,"values":[0.422,0.25,0.178,0.278,0.349,0.436,0.424,0.483,0.477,0.469,0.499,0.316,0.462,0.184,0.461,0.425,0.524,0.464,0.521,0.448,0.49,0.576,0.474,0.471,0.383,0.456,0.475,0.514,0.422,0.401,0.311,0.305,0.492,0.365,0.432,0.457,0.354,0.501,0.344,0.351,0.257,-0.045,0.079,0.222,0.405,0.417,0.437,0.385,0.463,0.516,0.481,0.501,0.454,0.352,0.485,0.562,0.41,0.464,0.321,0.422,0.21,0.225,0.536,0.42,0.482,0.487,0.471,0.503,0.514,0.499,0.527,0.469,0.45,0.506,0.468,0.38,0.341,0.317,0.487,0.573,0.451,0.383,0.56,0.574,0.446,0.519,0.478,0.356,0.344,0.38,0.329,0.103,0.478,0.498,0.513,0.386,0.475,0.432,0.097,0.373,0.294,0.324,0.493,0.316,0.322,0.345,0.455,0.329,0.286,0.37,0.263,0.417,0.23,0.512]},{"begin":120,"end":138,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":120,"original_end":null,"values":[0.342,0.355,0.346,0.422,0.566,0.426,0.495,0.369,0.468,0.388,0.365,0.458,0.484,0.291,0.349,0.408,0.443,0.349,0.275]}]},{"key":"cis_peptide","label":"CIS-PEPTIDE","kind":"point","features":[{"begin":111,"end":112,"feature_id":"3","type":"CIS_PEPTIDE","name":"cis-peptide","description":"cis-peptide bond in model 1 with omega angle 1.80","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":111,"original_end":112},{"begin":122,"end":123,"feature_id":"4","type":"CIS_PEPTIDE","name":"cis-peptide","description":"cis-peptide bond in model 1 with omega angle -12.12","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":122,"original_end":123}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":1,"end":114,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":1,"original_end":null,"values":[0,0,0,0,0,0,0,0,0,0,0,0,0,3.17,0,0,0,1.61,0,0,0,0,0,0,2.41,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.78,1.05,0,3.49,0,1.61,0,0,0,0,0,0,0.26,0,4.03,0,5.98,0,0,0,0,0,0,0,0,0,0,0,0,0,5.03,0,0,3.22,0.66,4.49,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8,0,0,0,0,0,0,0,0,0,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":134,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-0.38,-0.12,0.17,0.17,1.13,0.84,0.73,0.48,-0.23,-0.23,-1.09,-1.07,-0.78,-1.68,-1.79,-0.87,-0.61,-0.54,-1.4,-1.37,-1.08,-1.12,-0.19,0.22,-0.7,-1.6,-0.97,-1.04,-1.08,-1.39,-0.93,-1.58,-1.99,-1.84,-1.77,-2.11,-2.07,-1.77,-1.74,-2.44,-2.48,-2.41,-1.56,-1.29,-1.23,-1.23,-0.68,-0.96,-0.07,-0.07,0.79,0.24,-0.06,0.23,0.19,0.14,0.97,0.97,1.07,0.57,0.47,0.76,0.51,1.37,0.59,0.04,-0.5,-0.81,-1.23,-1.48,-1.48,-1.79,-1.79,-1.48,-1.79,-1.79,-0.93,-0.52,0.37,0.08,0.33,-0.59,-0.98,-1.02,-1.48,-2.09,-2.09,-2.67,-2.67,-2.1,-1.99,-1.73,-1.69,-0.77,-0.42,-0.72,-1.03,-0.22,-0.19,-0.16,0.44,0.48,-0.09,0.02,0.02,0.02,-0.2,-0.79,-0.82,-1.29,-1.02,-1.27,-1.08,-1.12,-0.91,-1.29,-0.78,-0.57,-0.61,-0.06,-0.17,-1.1,-0.24,-0.14,-0.36,-1.17,-1.49,-1.5,-2.36,-2.29]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":138,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.6,0.57,0.47,0.41,0.36,0.27,0.22,0.12,0.1,0.07,0.03,0.04,0.04,0.02,0.01,0.04,0.03,0.05,0.05,0.04,0.04,0.07,0.07,0.11,0.1,0.12,0.15,0.08,0.08,0.04,0.05,0.1,0.09,0.05,0.09,0.12,0.11,0.12,0.14,0.17,0.18,0.25,0.25,0.26,0.2,0.21,0.14,0.16,0.2,0.28,0.37,0.34,0.34,0.26,0.31,0.24,0.25,0.25,0.18,0.1,0.1,0.1,0.1,0.1,0.1,0.15,0.15,0.21,0.12,0.18,0.12,0.12,0.15,0.15,0.17,0.21,0.19,0.2,0.12,0.17,0.23,0.22,0.27,0.19,0.2,0.19,0.2,0.16,0.16,0.27,0.28,0.29,0.27,0.27,0.28,0.27,0.21,0.3,0.23,0.33,0.28,0.22,0.23,0.25,0.32,0.32,0.32,0.32,0.37,0.38,0.29,0.27,0.37,0.43,0.35,0.37,0.44,0.44,0.43,0.49,0.41,0.48,0.55,0.55,0.55,0.5,0.5,0.49,0.52,0.55,0.58,0.68,0.72,0.72,0.73,0.83,0.84,0.87]},{"begin":127,"end":138,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Disordered","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":176}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":138,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.05,0.06,0.07,0.08,0.09,0.1,0.13,0.15,0.18,0.19,0.2,0.21,0.22,0.21,0.21,0.21,0.21,0.21,0.21,0.2,0.21,0.22,0.22,0.23,0.24,0.25,0.25,0.24,0.24,0.24,0.24,0.24,0.24,0.24,0.23,0.22,0.2,0.2,0.19,0.17,0.16,0.16,0.15,0.15,0.15,0.15,0.16,0.18,0.19,0.21,0.23,0.25,0.27,0.29,0.32,0.34,0.36,0.36,0.38,0.38,0.38,0.39,0.4,0.4,0.4,0.38,0.36,0.35,0.34,0.33,0.33,0.32,0.31,0.31,0.31,0.32,0.33,0.34,0.36,0.38,0.39,0.4,0.4,0.4,0.4,0.39,0.38,0.38,0.36,0.35,0.33,0.33,0.34,0.35,0.36,0.37,0.38,0.4,0.42,0.43,0.41,0.38,0.37,0.36,0.35,0.33,0.33,0.33,0.33,0.34,0.34,0.35,0.36,0.38,0.39,0.4,0.41,0.42,0.42,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.41]}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":1,"end":138,"feature_id":"e6nilF1","type":"ECOD","name":"Parvo_coat","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"ECOD","original_begin":1,"original_end":138}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":1,"end":113,"feature_id":"PRO_0000441079","type":"CHAIN","name":null,"description":"p17","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":1,"original_end":113},{"begin":1,"end":113,"feature_id":"PRO_0000042762","type":"CHAIN","name":null,"description":"Virion infectivity factor","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":1,"original_end":113},{"begin":120,"end":138,"feature_id":"PRO_0000042762","type":"CHAIN","name":null,"description":"Virion infectivity factor","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176},{"begin":120,"end":138,"feature_id":"PRO_0000441080","type":"CHAIN","name":null,"description":"p7","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":5,"end":6,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"44% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":5,"original_end":6},{"begin":12,"end":13,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":12,"original_end":13},{"begin":15,"end":15,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Strongly reduced interaction with host APOBEC3F without affecting interaction with host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":15,"original_end":15},{"begin":16,"end":18,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"29% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":16,"original_end":18},{"begin":23,"end":24,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"14% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":23,"original_end":24},{"begin":29,"end":31,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"59% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":29,"original_end":31},{"begin":33,"end":34,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"35% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":33,"original_end":34},{"begin":38,"end":40,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"94% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":38,"original_end":40},{"begin":42,"end":43,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to ubiquitinate host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":42,"original_end":43},{"begin":43,"end":44,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"95% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":43,"original_end":44},{"begin":50,"end":50,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Strongly reduced interaction with host APOBEC3G and APOBEC3F.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":50,"original_end":50},{"begin":53,"end":54,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"39% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":53,"original_end":54},{"begin":58,"end":59,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"45% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":58,"original_end":59},{"begin":69,"end":70,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"97% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":69,"original_end":70},{"begin":73,"end":74,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect onviral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":73,"original_end":74},{"begin":79,"end":80,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with host APOBEC3F. Does not affect interaction with host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":79,"original_end":80},{"begin":80,"end":81,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"19% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":80,"original_end":81},{"begin":86,"end":87,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"42% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":86,"original_end":87},{"begin":90,"end":92,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":90,"original_end":92},{"begin":92,"end":93,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Impaired ability to mediate ubiquitination of host APOBEC3H.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":92,"original_end":93},{"begin":97,"end":98,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"27% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":97,"original_end":98},{"begin":105,"end":107,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"98% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":105,"original_end":107},{"begin":108,"end":108,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Complete loss of interaction with CUL5.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":108,"original_end":108},{"begin":111,"end":112,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"93% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":111,"original_end":112},{"begin":120,"end":120,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":158},{"begin":120,"end":122,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"9% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":160},{"begin":122,"end":122,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"33% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":160,"original_end":160},{"begin":123,"end":123,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"27% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":161},{"begin":123,"end":125,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"97% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":163},{"begin":123,"end":126,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"88% loss of viral infectivity. Strongly decreased interaction with host CUL5.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":164},{"begin":124,"end":124,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":162,"original_end":162},{"begin":125,"end":125,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"26% loss of viral infectivity. Does not affect interaction with host ELOC.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":163,"original_end":163},{"begin":126,"end":126,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"63% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":164,"original_end":164},{"begin":127,"end":127,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"67% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":165},{"begin":128,"end":128,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"20% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":166,"original_end":166},{"begin":131,"end":131,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with host ELOC.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":169,"original_end":169},{"begin":131,"end":132,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"42% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":169,"original_end":170}]},{"key":"other_angle_outliers","label":"ANGLE_OUTLIERS","kind":"numeric_series","features":[{"begin":83,"end":83,"feature_id":"ANGLE_OUTLIERS","type":"ANGLE_OUTLIERS","name":"ANGLE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[1.0]}]},{"key":"other_artifact","label":"ARTIFACT","kind":"range","features":[{"begin":114,"end":119,"feature_id":"range_feature_2","type":"ARTIFACT","name":"linker","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"PDB","original_begin":114,"original_end":119}]},{"key":"other_compositionally_biased_region","label":"COMPOSITIONALLY_BIASED_REGION","kind":"point","features":[{"begin":138,"end":138,"feature_id":null,"type":"COMPOSITIONALLY_BIASED_REGION","name":null,"description":"Basic residues","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":176,"original_end":176}]},{"key":"other_modified_residue","label":"MODIFIED_RESIDUE","kind":"point","features":[{"begin":96,"end":96,"feature_id":null,"type":"MODIFIED_RESIDUE","name":null,"description":"Phosphothreonine; by host MAP4K1","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":96,"original_end":96},{"begin":127,"end":127,"feature_id":null,"type":"MODIFIED_RESIDUE","name":null,"description":"Phosphoserine; by host MAP4K1","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":165}]},{"key":"other_plane_outliers","label":"PLANE_OUTLIERS","kind":"numeric_series","features":[{"begin":17,"end":17,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":17,"original_end":null,"values":[1.0]},{"begin":23,"end":23,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":23,"original_end":null,"values":[1.0]},{"begin":33,"end":33,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":33,"original_end":null,"values":[1.0]}]},{"key":"other_region_of_interest","label":"REGION_OF_INTEREST","kind":"range","features":[{"begin":14,"end":17,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F; F1-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":14,"original_end":17},{"begin":40,"end":44,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3G; G-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":40,"original_end":44},{"begin":54,"end":72,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F and APOBEC3G; FG-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":54,"original_end":72},{"begin":74,"end":79,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F; F2-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":74,"original_end":79},{"begin":75,"end":113,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"RNA-binding","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":75,"original_end":113},{"begin":120,"end":126,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Multimerization","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":164},{"begin":120,"end":138,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"SOCS box-like","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176},{"begin":133,"end":134,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Membrane association","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":171,"original_end":172}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"range","features":[{"begin":90,"end":93,"feature_id":null,"type":"SEQUENCE_VARIANT","name":null,"description":"In strain: Clinical isolate; from an asymptomatic patient; Vif is mislocalized to the nucleus and non functional.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":90,"original_end":93}]},{"key":"other_short_sequence_motif","label":"SHORT_SEQUENCE_MOTIF","kind":"range","features":[{"begin":108,"end":113,"feature_id":null,"type":"SHORT_SEQUENCE_MOTIF","name":null,"description":"HCCH motif","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":108,"original_end":113}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":115,"end":119,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.F","provenance_source":"PDB","original_begin":115,"original_end":119}]}]},{"instance_id":"6NIL.C","entity_id":"3","label_asym_id":"C","auth_asym_id":"C","description":"Virion infectivity factor","polymer_type":"polypeptide(L)","sequence":{"value":"MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDEASEGSQIKPPLPSVRKLTEDRWNK","length":138},"alignments":[{"source":"UNIPROT","target_id":"P12504","target_sequence":"MENRWQVMIVWQVDRMRINTWKRLVKHHMYISRKAKDWFYRHHYESTNPKISSEVHIPLGDAKLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPDLADQLIHLHYFDCFSESAIRNTILGRIVSPRCEYQAGHNKVGSLQYLALAALIKPKQIKPPLPSVRKLTEDRWNKPQKTKGHRGSHTMNGH","query_coverage":0.9565217391304348,"query_length":138,"target_coverage":0.6875,"target_length":192,"orientation":null,"regions":[{"query_begin":1,"query_end":113,"target_begin":1,"target_end":113,"exon_shift":null},{"query_begin":120,"query_end":138,"target_begin":158,"target_end":176,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":5,"end":13,"feature_id":"AA5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":5,"original_end":13},{"begin":5,"end":13,"feature_id":"AA4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":5,"original_end":13},{"begin":17,"end":25,"feature_id":"HELX_P13","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":17,"original_end":25},{"begin":55,"end":59,"feature_id":"AA4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":55,"original_end":59},{"begin":62,"end":68,"feature_id":"AA4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":62,"original_end":68},{"begin":83,"end":90,"feature_id":"AA5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":83,"original_end":90},{"begin":83,"end":90,"feature_id":"AA4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":83,"original_end":90},{"begin":95,"end":97,"feature_id":"AA5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":95,"original_end":97},{"begin":99,"end":108,"feature_id":"HELX_P14","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":99,"original_end":108},{"begin":127,"end":132,"feature_id":"HELX_P15","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PROMOTIF","original_begin":127,"original_end":132}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":4,"end":4,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":4,"original_end":null,"values":[1.0]},{"begin":10,"end":10,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":10,"original_end":null,"values":[2.0]},{"begin":17,"end":17,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":17,"original_end":null,"values":[1.0]},{"begin":20,"end":20,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":20,"original_end":null,"values":[1.0]},{"begin":23,"end":23,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":23,"original_end":null,"values":[5.0]},{"begin":57,"end":57,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":57,"original_end":null,"values":[1.0]},{"begin":64,"end":64,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":64,"original_end":null,"values":[2.0]},{"begin":66,"end":66,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":66,"original_end":null,"values":[1.0]},{"begin":74,"end":75,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":74,"original_end":null,"values":[1.0,1.0]},{"begin":80,"end":81,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":80,"original_end":null,"values":[1.0,1.0]},{"begin":87,"end":87,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":87,"original_end":null,"values":[1.0]},{"begin":98,"end":99,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":98,"original_end":null,"values":[2.0,2.0]},{"begin":106,"end":106,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":106,"original_end":null,"values":[1.0]},{"begin":111,"end":112,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":111,"original_end":null,"values":[1.0,1.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":1,"end":114,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":1,"original_end":null,"values":[0.456,0.259,0.187,0.295,0.338,0.427,0.41,0.484,0.467,0.503,0.493,0.33,0.483,0.166,0.458,0.416,0.496,0.496,0.481,0.429,0.483,0.567,0.45,0.485,0.439,0.479,0.47,0.513,0.462,0.41,0.278,0.304,0.511,0.365,0.481,0.472,0.343,0.488,0.337,0.369,0.287,-0.036,0.08,0.258,0.421,0.392,0.437,0.344,0.449,0.538,0.466,0.517,0.467,0.393,0.466,0.555,0.418,0.458,0.304,0.409,0.209,0.251,0.559,0.441,0.473,0.481,0.492,0.498,0.538,0.499,0.496,0.479,0.493,0.498,0.513,0.377,0.348,0.344,0.468,0.557,0.426,0.432,0.542,0.586,0.437,0.5,0.47,0.355,0.368,0.337,0.34,0.073,0.47,0.504,0.52,0.385,0.471,0.432,0.088,0.378,0.312,0.336,0.509,0.315,0.331,0.348,0.467,0.309,0.301,0.371,0.231,0.413,0.243,0.521]},{"begin":120,"end":138,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":120,"original_end":null,"values":[0.357,0.353,0.315,0.419,0.556,0.451,0.496,0.355,0.462,0.401,0.352,0.435,0.497,0.257,0.326,0.398,0.44,0.374,0.261]}]},{"key":"cis_peptide","label":"CIS-PEPTIDE","kind":"point","features":[{"begin":111,"end":112,"feature_id":"1","type":"CIS_PEPTIDE","name":"cis-peptide","description":"cis-peptide bond in model 1 with omega angle 1.80","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":111,"original_end":112},{"begin":122,"end":123,"feature_id":"2","type":"CIS_PEPTIDE","name":"cis-peptide","description":"cis-peptide bond in model 1 with omega angle -12.12","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":122,"original_end":123}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":1,"end":114,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":1,"original_end":null,"values":[0,0,0,0,0,0,0,0,0,0,0,0,0,3.67,0,0,0,1.07,0,0,0,0,0,0,3.76,0,0,0,0,0,0,0,0,0,0.26,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.76,0.93,0,3.76,0,1.61,0,0,0,0,0,0,0.26,0,4.56,0,5.12,0,0,0,0,0,0,0,0,0,0,0,0,0,4.24,0,0.23,2.68,0.39,4.35,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26,0,0,0,0,0,0,0,0,0,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":134,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-0.38,-0.12,0.17,0.17,1.13,0.84,0.73,0.48,-0.23,-0.23,-1.09,-1.07,-0.78,-1.68,-1.79,-0.87,-0.61,-0.54,-1.4,-1.37,-1.08,-1.12,-0.19,0.22,-0.7,-1.6,-0.97,-1.04,-1.08,-1.39,-0.93,-1.58,-1.99,-1.84,-1.77,-2.11,-2.07,-1.77,-1.74,-2.44,-2.48,-2.41,-1.56,-1.29,-1.23,-1.23,-0.68,-0.96,-0.07,-0.07,0.79,0.24,-0.06,0.23,0.19,0.14,0.97,0.97,1.07,0.57,0.47,0.76,0.51,1.37,0.59,0.04,-0.5,-0.81,-1.23,-1.48,-1.48,-1.79,-1.79,-1.48,-1.79,-1.79,-0.93,-0.52,0.37,0.08,0.33,-0.59,-0.98,-1.02,-1.48,-2.09,-2.09,-2.67,-2.67,-2.1,-1.99,-1.73,-1.69,-0.77,-0.42,-0.72,-1.03,-0.22,-0.19,-0.16,0.44,0.48,-0.09,0.02,0.02,0.02,-0.2,-0.79,-0.82,-1.29,-1.02,-1.27,-1.08,-1.12,-0.91,-1.29,-0.78,-0.57,-0.61,-0.06,-0.17,-1.1,-0.24,-0.14,-0.36,-1.17,-1.49,-1.5,-2.36,-2.29]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":138,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.6,0.57,0.47,0.41,0.36,0.27,0.22,0.12,0.1,0.07,0.03,0.04,0.04,0.02,0.01,0.04,0.03,0.05,0.05,0.04,0.04,0.07,0.07,0.11,0.1,0.12,0.15,0.08,0.08,0.04,0.05,0.1,0.09,0.05,0.09,0.12,0.11,0.12,0.14,0.17,0.18,0.25,0.25,0.26,0.2,0.21,0.14,0.16,0.2,0.28,0.37,0.34,0.34,0.26,0.31,0.24,0.25,0.25,0.18,0.1,0.1,0.1,0.1,0.1,0.1,0.15,0.15,0.21,0.12,0.18,0.12,0.12,0.15,0.15,0.17,0.21,0.19,0.2,0.12,0.17,0.23,0.22,0.27,0.19,0.2,0.19,0.2,0.16,0.16,0.27,0.28,0.29,0.27,0.27,0.28,0.27,0.21,0.3,0.23,0.33,0.28,0.22,0.23,0.25,0.32,0.32,0.32,0.32,0.37,0.38,0.29,0.27,0.37,0.43,0.35,0.37,0.44,0.44,0.43,0.49,0.41,0.48,0.55,0.55,0.55,0.5,0.5,0.49,0.52,0.55,0.58,0.68,0.72,0.72,0.73,0.83,0.84,0.87]},{"begin":127,"end":138,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Disordered","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":176}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":138,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.05,0.06,0.07,0.08,0.09,0.1,0.13,0.15,0.18,0.19,0.2,0.21,0.22,0.21,0.21,0.21,0.21,0.21,0.21,0.2,0.21,0.22,0.22,0.23,0.24,0.25,0.25,0.24,0.24,0.24,0.24,0.24,0.24,0.24,0.23,0.22,0.2,0.2,0.19,0.17,0.16,0.16,0.15,0.15,0.15,0.15,0.16,0.18,0.19,0.21,0.23,0.25,0.27,0.29,0.32,0.34,0.36,0.36,0.38,0.38,0.38,0.39,0.4,0.4,0.4,0.38,0.36,0.35,0.34,0.33,0.33,0.32,0.31,0.31,0.31,0.32,0.33,0.34,0.36,0.38,0.39,0.4,0.4,0.4,0.4,0.39,0.38,0.38,0.36,0.35,0.33,0.33,0.34,0.35,0.36,0.37,0.38,0.4,0.42,0.43,0.41,0.38,0.37,0.36,0.35,0.33,0.33,0.33,0.33,0.34,0.34,0.35,0.36,0.38,0.39,0.4,0.41,0.42,0.42,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.41]}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":1,"end":138,"feature_id":"e6nilC1","type":"ECOD","name":"Interfer-bind","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"ECOD","original_begin":1,"original_end":138}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":1,"end":113,"feature_id":"PRO_0000441079","type":"CHAIN","name":null,"description":"p17","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":1,"original_end":113},{"begin":1,"end":113,"feature_id":"PRO_0000042762","type":"CHAIN","name":null,"description":"Virion infectivity factor","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":1,"original_end":113},{"begin":120,"end":138,"feature_id":"PRO_0000042762","type":"CHAIN","name":null,"description":"Virion infectivity factor","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176},{"begin":120,"end":138,"feature_id":"PRO_0000441080","type":"CHAIN","name":null,"description":"p7","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":5,"end":6,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"44% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":5,"original_end":6},{"begin":12,"end":13,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":12,"original_end":13},{"begin":15,"end":15,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Strongly reduced interaction with host APOBEC3F without affecting interaction with host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":15,"original_end":15},{"begin":16,"end":18,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"29% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":16,"original_end":18},{"begin":23,"end":24,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"14% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":23,"original_end":24},{"begin":29,"end":31,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"59% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":29,"original_end":31},{"begin":33,"end":34,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"35% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":33,"original_end":34},{"begin":38,"end":40,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"94% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":38,"original_end":40},{"begin":42,"end":43,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to ubiquitinate host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":42,"original_end":43},{"begin":43,"end":44,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"95% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":43,"original_end":44},{"begin":50,"end":50,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Strongly reduced interaction with host APOBEC3G and APOBEC3F.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":50,"original_end":50},{"begin":53,"end":54,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"39% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":53,"original_end":54},{"begin":58,"end":59,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"45% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":58,"original_end":59},{"begin":69,"end":70,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"97% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":69,"original_end":70},{"begin":73,"end":74,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect onviral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":73,"original_end":74},{"begin":79,"end":80,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with host APOBEC3F. Does not affect interaction with host APOBEC3G.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":79,"original_end":80},{"begin":80,"end":81,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"19% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":80,"original_end":81},{"begin":86,"end":87,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"42% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":86,"original_end":87},{"begin":90,"end":92,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":90,"original_end":92},{"begin":92,"end":93,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Impaired ability to mediate ubiquitination of host APOBEC3H.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":92,"original_end":93},{"begin":97,"end":98,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"27% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":97,"original_end":98},{"begin":105,"end":107,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"98% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":105,"original_end":107},{"begin":108,"end":108,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Complete loss of interaction with CUL5.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":108,"original_end":108},{"begin":111,"end":112,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"93% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":111,"original_end":112},{"begin":120,"end":120,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect on viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":158},{"begin":120,"end":122,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"9% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":160},{"begin":122,"end":122,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"33% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":160,"original_end":160},{"begin":123,"end":123,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"27% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":161},{"begin":123,"end":125,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"97% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":163},{"begin":123,"end":126,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"88% loss of viral infectivity. Strongly decreased interaction with host CUL5.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":161,"original_end":164},{"begin":124,"end":124,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"No effect viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":162,"original_end":162},{"begin":125,"end":125,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"26% loss of viral infectivity. Does not affect interaction with host ELOC.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":163,"original_end":163},{"begin":126,"end":126,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"63% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":164,"original_end":164},{"begin":127,"end":127,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"67% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":165},{"begin":128,"end":128,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"20% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":166,"original_end":166},{"begin":131,"end":131,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with host ELOC.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":169,"original_end":169},{"begin":131,"end":132,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"42% loss of viral infectivity.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":169,"original_end":170}]},{"key":"other_angle_outliers","label":"ANGLE_OUTLIERS","kind":"numeric_series","features":[{"begin":83,"end":83,"feature_id":"ANGLE_OUTLIERS","type":"ANGLE_OUTLIERS","name":"ANGLE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[1.0]}]},{"key":"other_artifact","label":"ARTIFACT","kind":"range","features":[{"begin":114,"end":119,"feature_id":"range_feature_2","type":"ARTIFACT","name":"linker","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_3","provenance_source":"PDB","original_begin":114,"original_end":119}]},{"key":"other_compositionally_biased_region","label":"COMPOSITIONALLY_BIASED_REGION","kind":"point","features":[{"begin":138,"end":138,"feature_id":null,"type":"COMPOSITIONALLY_BIASED_REGION","name":null,"description":"Basic residues","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":176,"original_end":176}]},{"key":"other_modified_residue","label":"MODIFIED_RESIDUE","kind":"point","features":[{"begin":96,"end":96,"feature_id":null,"type":"MODIFIED_RESIDUE","name":null,"description":"Phosphothreonine; by host MAP4K1","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":96,"original_end":96},{"begin":127,"end":127,"feature_id":null,"type":"MODIFIED_RESIDUE","name":null,"description":"Phosphoserine; by host MAP4K1","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":165,"original_end":165}]},{"key":"other_plane_outliers","label":"PLANE_OUTLIERS","kind":"numeric_series","features":[{"begin":17,"end":17,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":17,"original_end":null,"values":[1.0]},{"begin":23,"end":23,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":23,"original_end":null,"values":[1.0]},{"begin":33,"end":33,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":33,"original_end":null,"values":[1.0]}]},{"key":"other_region_of_interest","label":"REGION_OF_INTEREST","kind":"range","features":[{"begin":14,"end":17,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F; F1-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":14,"original_end":17},{"begin":40,"end":44,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3G; G-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":40,"original_end":44},{"begin":54,"end":72,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F and APOBEC3G; FG-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":54,"original_end":72},{"begin":74,"end":79,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Interaction with host APOBEC3F; F2-box","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":74,"original_end":79},{"begin":75,"end":113,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"RNA-binding","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":75,"original_end":113},{"begin":120,"end":126,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Multimerization","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":164},{"begin":120,"end":138,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"SOCS box-like","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":158,"original_end":176},{"begin":133,"end":134,"feature_id":null,"type":"REGION_OF_INTEREST","name":null,"description":"Membrane association","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":171,"original_end":172}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"range","features":[{"begin":90,"end":93,"feature_id":null,"type":"SEQUENCE_VARIANT","name":null,"description":"In strain: Clinical isolate; from an asymptomatic patient; Vif is mislocalized to the nucleus and non functional.","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":90,"original_end":93}]},{"key":"other_short_sequence_motif","label":"SHORT_SEQUENCE_MOTIF","kind":"range","features":[{"begin":108,"end":113,"feature_id":null,"type":"SHORT_SEQUENCE_MOTIF","name":null,"description":"HCCH motif","value":null,"source":"UNIPROT","source_id":"P12504","provenance_source":null,"original_begin":108,"original_end":113}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":115,"end":119,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.C","provenance_source":"PDB","original_begin":115,"original_end":119}]}]},{"instance_id":"6NIL.K","entity_id":"2","label_asym_id":"K","auth_asym_id":"K","description":"Core-binding factor subunit beta","polymer_type":"polypeptide(L)","sequence":{"value":"MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTR","length":151},"alignments":[{"source":"UNIPROT","target_id":"Q13951","target_sequence":"MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQLLAVTGKKTTRP","query_coverage":1.0,"query_length":151,"target_coverage":0.8296703296703297,"target_length":182,"orientation":null,"regions":[{"query_begin":1,"query_end":151,"target_begin":1,"target_end":151,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":5,"end":15,"feature_id":"HELX_P53","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":5,"original_end":15},{"begin":15,"end":22,"feature_id":"HELX_P54","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":15,"original_end":22},{"begin":26,"end":27,"feature_id":"AB9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":26,"original_end":27},{"begin":39,"end":50,"feature_id":"HELX_P55","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":39,"original_end":50},{"begin":56,"end":58,"feature_id":"AC1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":56,"original_end":58},{"begin":56,"end":58,"feature_id":"AC2","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":56,"original_end":58},{"begin":64,"end":70,"feature_id":"AC1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":64,"original_end":70},{"begin":64,"end":70,"feature_id":"AC2","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":64,"original_end":70},{"begin":85,"end":91,"feature_id":"AB9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":85,"original_end":91},{"begin":94,"end":103,"feature_id":"AB9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":94,"original_end":103},{"begin":106,"end":115,"feature_id":"AB9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":106,"original_end":115},{"begin":121,"end":127,"feature_id":"AB9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":121,"original_end":127},{"begin":130,"end":134,"feature_id":"HELX_P56","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":130,"original_end":134},{"begin":140,"end":144,"feature_id":"HELX_P57","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PROMOTIF","original_begin":140,"original_end":144}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":11,"end":11,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":11,"original_end":null,"values":[2.0]},{"begin":16,"end":16,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":16,"original_end":null,"values":[1.0]},{"begin":19,"end":19,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":19,"original_end":null,"values":[1.0]},{"begin":21,"end":21,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":21,"original_end":null,"values":[1.0]},{"begin":32,"end":32,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":32,"original_end":null,"values":[1.0]},{"begin":35,"end":35,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":35,"original_end":null,"values":[1.0]},{"begin":67,"end":67,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":67,"original_end":null,"values":[2.0]},{"begin":83,"end":84,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[1.0,1.0]},{"begin":100,"end":100,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":100,"original_end":null,"values":[2.0]},{"begin":109,"end":110,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":109,"original_end":null,"values":[1.0,1.0]},{"begin":125,"end":125,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":125,"original_end":null,"values":[2.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":3,"end":73,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":3,"original_end":null,"values":[0.1,0.241,-0.012,0.366,0.218,0.238,0.372,0.138,0.297,0.226,0.288,0.022,0.183,0.235,0.483,0.376,0.216,0.438,0.42,0.172,0.124,0.213,0.39,0.417,0.43,0.422,0.453,0.44,0.395,0.491,0.401,0.291,0.471,0.414,0.45,0.216,0.202,0.532,0.392,0.384,0.442,0.431,0.285,0.399,0.343,0.332,0.139,0.246,0.454,0.438,0.554,0.328,0.467,0.462,0.525,0.418,0.507,0.382,0.465,0.421,0.416,0.474,0.448,0.508,0.396,0.539,0.432,0.49,0.426,0.335,0.569]},{"begin":83,"end":151,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[0.227,0.357,0.449,0.39,0.212,0.183,0.425,0.354,0.458,0.428,0.257,0.505,0.392,0.358,0.341,0.418,0.48,0.347,0.499,0.403,0.388,0.451,0.439,0.288,0.381,0.481,0.464,0.503,0.399,0.394,0.524,0.305,0.12,0.483,0.365,0.395,0.444,0.422,0.324,0.383,0.353,0.45,0.273,0.284,0.354,0.391,0.34,0.35,0.213,0.422,0.356,0.052,0.415,0.193,-0.048,0.231,0.195,0.326,0.008,0.249,0.144,0.218,0.03,0.372,0.281,0.186,0.273,0.006,0.197]}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":3,"end":73,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":3,"original_end":null,"values":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.44,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":147,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-0.99,-1.29,-1.54,-0.73,-1.59,-2.44,-2.66,-2.66,-1.96,-1.14,-1.56,-1.56,-1.44,-1.14,-1.26,-1.26,-0.59,-1.29,-1.1,-1.03,-0.74,-1.24,-1.2,-0.39,-0.5,-1.17,-1.28,-1.96,-1.88,-2.12,-2.43,-2.89,-3.59,-2.89,-3.0,-2.19,-2.4,-2.43,-1.84,-1.18,-1.18,-1.18,-1.42,-1.42,-1.82,-1.82,-0.93,-0.93,-0.9,0.07,0.66,0.62,1.08,1.09,1.09,1.01,0.72,0.83,-0.02,0.09,0.48,0.34,0.62,0.92,0.4,0.1,-0.37,-0.37,-1.07,-1.88,-2.09,-2.37,-2.46,-2.44,-2.56,-2.9,-2.66,-1.8,-1.69,-0.88,-1.19,-1.51,-1.81,-1.11,-0.77,-1.06,-1.06,-0.81,-0.81,-0.86,-0.16,0.06,0.07,0.61,1.47,0.61,0.71,0.76,1.47,1.73,2.41,2.1,1.17,0.7,0.99,1.53,0.68,0.82,-0.03,-1.03,-0.51,-0.47,-0.47,-0.16,-0.7,-0.03,-0.03,-0.03,0.78,-0.03,-0.03,-0.38,-1.09,-0.84,-1.51,-2.32,-2.32,-3.02,-2.43,-1.62,-1.03,-0.92,-1.51,-0.92,-0.22,-0.22,-0.22,-0.22,-1.14,-1.84,-1.96,-1.64,-2.34]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":151,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.94,0.87,0.84,0.8,0.76,0.71,0.63,0.53,0.48,0.43,0.34,0.36,0.32,0.33,0.3,0.35,0.29,0.28,0.22,0.24,0.24,0.19,0.25,0.26,0.24,0.28,0.27,0.33,0.39,0.39,0.41,0.44,0.43,0.36,0.38,0.46,0.44,0.4,0.39,0.45,0.45,0.44,0.5,0.51,0.46,0.46,0.37,0.33,0.32,0.32,0.34,0.32,0.35,0.3,0.37,0.3,0.31,0.27,0.3,0.34,0.3,0.3,0.23,0.23,0.23,0.3,0.31,0.36,0.41,0.43,0.46,0.45,0.44,0.45,0.43,0.36,0.44,0.35,0.41,0.47,0.44,0.44,0.44,0.52,0.44,0.36,0.27,0.26,0.23,0.25,0.22,0.13,0.08,0.08,0.07,0.08,0.08,0.05,0.05,0.03,0.03,0.03,0.02,0.01,0.01,0.01,0.02,0.03,0.01,0.02,0.02,0.02,0.03,0.03,0.02,0.02,0.02,0.03,0.05,0.08,0.12,0.11,0.11,0.17,0.26,0.25,0.32,0.26,0.26,0.36,0.35,0.34,0.32,0.33,0.41,0.48,0.45,0.51,0.48,0.48,0.45,0.51,0.57,0.61,0.64,0.68,0.7,0.76,0.85,0.89,0.91]}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":151,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.38,0.38,0.4,0.4,0.41,0.43,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.42,0.42,0.42,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.42,0.42,0.42,0.42,0.42,0.41,0.41,0.41,0.4,0.39,0.39,0.38,0.38,0.37,0.36,0.36,0.37,0.37,0.37,0.38,0.38,0.38,0.38,0.39,0.4,0.41,0.42,0.43,0.43,0.42,0.41,0.4,0.4,0.4,0.4,0.39,0.39,0.39,0.38,0.38,0.38,0.38,0.38,0.38,0.38,0.39,0.4,0.41,0.43,0.41,0.38,0.35,0.32,0.3,0.28,0.27,0.26,0.26,0.25,0.25,0.25,0.25,0.25,0.25,0.25,0.25,0.26,0.27,0.28,0.3,0.31,0.33,0.34,0.36,0.38,0.41,0.43,0.43,0.42,0.41,0.39,0.38,0.36,0.35,0.34,0.34,0.35,0.35,0.34,0.34,0.35,0.36,0.38,0.39,0.39,0.41,0.42,0.42,0.42,0.4,0.38,0.37,0.36,0.34,0.33,0.31,0.3,0.3,0.3,0.31,0.32,0.33,0.34,0.34,0.34,0.34,0.34,0.34,0.33,0.32,0.31,0.3,0.31,0.32,0.33,0.35,0.37]}]},{"key":"cath","label":"CATH","kind":"range","features":[{"begin":3,"end":151,"feature_id":"2.40.250.10","type":"CATH","name":"Core binding factor, beta subunit","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"CATH","original_begin":3,"original_end":151}]},{"key":"scop","label":"SCOP","kind":"range","features":[{"begin":4,"end":141,"feature_id":"8042548","type":"SCOP_2_B_SUPERFAMILY","name":"Core binding factor beta, CBF","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"SCOP2B","original_begin":4,"original_end":141}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":3,"end":151,"feature_id":"e6nilK1","type":"ECOD","name":"Parvo_coat","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"ECOD","original_begin":3,"original_end":151}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":1,"end":151,"feature_id":"PRO_0000058301","type":"CHAIN","name":null,"description":"Core-binding factor subunit beta","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":1,"original_end":151}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":35,"end":43,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to promote ubiquitination and degradation of APOBEC3F following interaction with HIV-1 Vif. Does not affect ability to promote ubiquitination and degradation of APOBEC3G following interaction with HIV-1 Vif.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":35,"original_end":43},{"begin":54,"end":54,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to promote ubiquitination and degradation of APOBEC3F following interaction with HIV-1 Vif. Does not affect ability to promote ubiquitination and degradation of APOBEC3G following interaction with HIV-1 Vif.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":54,"original_end":54},{"begin":100,"end":100,"feature_id":"VAR_036226","type":"SEQUENCE_VARIANT","name":null,"description":"In a breast cancer sample; somatic mutation; dbSNP:rs1280921900.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":100,"original_end":100}]},{"key":"other_plane_outliers","label":"PLANE_OUTLIERS","kind":"numeric_series","features":[{"begin":40,"end":40,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":40,"original_end":null,"values":[1.0]},{"begin":144,"end":144,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":144,"original_end":null,"values":[1.0]}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"range","features":[{"begin":83,"end":151,"feature_id":"VAR_087753","type":"SEQUENCE_VARIANT","name":null,"description":"In CLCD2.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":83,"original_end":151}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":1,"end":2,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":1,"original_end":2},{"begin":74,"end":82,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.K","provenance_source":"PDB","original_begin":74,"original_end":82}]}]},{"instance_id":"6NIL.H","entity_id":"2","label_asym_id":"H","auth_asym_id":"H","description":"Core-binding factor subunit beta","polymer_type":"polypeptide(L)","sequence":{"value":"MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTR","length":151},"alignments":[{"source":"UNIPROT","target_id":"Q13951","target_sequence":"MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQLLAVTGKKTTRP","query_coverage":1.0,"query_length":151,"target_coverage":0.8296703296703297,"target_length":182,"orientation":null,"regions":[{"query_begin":1,"query_end":151,"target_begin":1,"target_end":151,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":5,"end":15,"feature_id":"HELX_P38","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":5,"original_end":15},{"begin":15,"end":22,"feature_id":"HELX_P39","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":15,"original_end":22},{"begin":26,"end":27,"feature_id":"AB4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":26,"original_end":27},{"begin":39,"end":50,"feature_id":"HELX_P40","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":39,"original_end":50},{"begin":56,"end":58,"feature_id":"AB6","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":56,"original_end":58},{"begin":56,"end":58,"feature_id":"AB5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":56,"original_end":58},{"begin":64,"end":70,"feature_id":"AB6","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":64,"original_end":70},{"begin":64,"end":70,"feature_id":"AB5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":64,"original_end":70},{"begin":85,"end":91,"feature_id":"AB4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":85,"original_end":91},{"begin":94,"end":103,"feature_id":"AB4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":94,"original_end":103},{"begin":106,"end":115,"feature_id":"AB4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":106,"original_end":115},{"begin":121,"end":127,"feature_id":"AB4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":121,"original_end":127},{"begin":130,"end":134,"feature_id":"HELX_P41","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":130,"original_end":134},{"begin":140,"end":144,"feature_id":"HELX_P42","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PROMOTIF","original_begin":140,"original_end":144}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":11,"end":11,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":11,"original_end":null,"values":[2.0]},{"begin":16,"end":16,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":16,"original_end":null,"values":[1.0]},{"begin":19,"end":19,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":19,"original_end":null,"values":[1.0]},{"begin":21,"end":21,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":21,"original_end":null,"values":[1.0]},{"begin":32,"end":32,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":32,"original_end":null,"values":[1.0]},{"begin":35,"end":35,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":35,"original_end":null,"values":[1.0]},{"begin":67,"end":67,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":67,"original_end":null,"values":[2.0]},{"begin":83,"end":84,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[1.0,1.0]},{"begin":100,"end":100,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":100,"original_end":null,"values":[2.0]},{"begin":109,"end":110,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":109,"original_end":null,"values":[1.0,2.0]},{"begin":125,"end":125,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":125,"original_end":null,"values":[3.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":3,"end":73,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":3,"original_end":null,"values":[0.082,0.276,-0.002,0.35,0.201,0.226,0.39,0.18,0.311,0.266,0.285,0.037,0.213,0.227,0.499,0.366,0.204,0.438,0.426,0.162,0.164,0.224,0.401,0.403,0.459,0.421,0.463,0.473,0.413,0.477,0.427,0.283,0.49,0.429,0.468,0.196,0.209,0.524,0.396,0.352,0.447,0.407,0.259,0.398,0.383,0.318,0.132,0.274,0.429,0.451,0.534,0.365,0.45,0.475,0.521,0.428,0.506,0.423,0.445,0.381,0.434,0.443,0.454,0.483,0.375,0.546,0.459,0.474,0.403,0.347,0.571]},{"begin":83,"end":151,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[0.203,0.364,0.446,0.385,0.21,0.109,0.408,0.349,0.474,0.398,0.295,0.48,0.401,0.363,0.355,0.411,0.466,0.31,0.487,0.422,0.402,0.486,0.388,0.275,0.405,0.499,0.431,0.515,0.412,0.39,0.519,0.327,0.126,0.477,0.334,0.387,0.439,0.433,0.33,0.34,0.391,0.445,0.292,0.273,0.398,0.376,0.323,0.344,0.226,0.415,0.283,0.003,0.392,0.157,-0.066,0.249,0.19,0.325,-0.025,0.277,0.2,0.2,0.057,0.356,0.285,0.173,0.307,0.006,0.226]}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":3,"end":73,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":3,"original_end":null,"values":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25,0,0,0,0,0,0,0,0,0,0,0,0,0.69,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":147,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-0.99,-1.29,-1.54,-0.73,-1.59,-2.44,-2.66,-2.66,-1.96,-1.14,-1.56,-1.56,-1.44,-1.14,-1.26,-1.26,-0.59,-1.29,-1.1,-1.03,-0.74,-1.24,-1.2,-0.39,-0.5,-1.17,-1.28,-1.96,-1.88,-2.12,-2.43,-2.89,-3.59,-2.89,-3.0,-2.19,-2.4,-2.43,-1.84,-1.18,-1.18,-1.18,-1.42,-1.42,-1.82,-1.82,-0.93,-0.93,-0.9,0.07,0.66,0.62,1.08,1.09,1.09,1.01,0.72,0.83,-0.02,0.09,0.48,0.34,0.62,0.92,0.4,0.1,-0.37,-0.37,-1.07,-1.88,-2.09,-2.37,-2.46,-2.44,-2.56,-2.9,-2.66,-1.8,-1.69,-0.88,-1.19,-1.51,-1.81,-1.11,-0.77,-1.06,-1.06,-0.81,-0.81,-0.86,-0.16,0.06,0.07,0.61,1.47,0.61,0.71,0.76,1.47,1.73,2.41,2.1,1.17,0.7,0.99,1.53,0.68,0.82,-0.03,-1.03,-0.51,-0.47,-0.47,-0.16,-0.7,-0.03,-0.03,-0.03,0.78,-0.03,-0.03,-0.38,-1.09,-0.84,-1.51,-2.32,-2.32,-3.02,-2.43,-1.62,-1.03,-0.92,-1.51,-0.92,-0.22,-0.22,-0.22,-0.22,-1.14,-1.84,-1.96,-1.64,-2.34]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":151,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.94,0.87,0.84,0.8,0.76,0.71,0.63,0.53,0.48,0.43,0.34,0.36,0.32,0.33,0.3,0.35,0.29,0.28,0.22,0.24,0.24,0.19,0.25,0.26,0.24,0.28,0.27,0.33,0.39,0.39,0.41,0.44,0.43,0.36,0.38,0.46,0.44,0.4,0.39,0.45,0.45,0.44,0.5,0.51,0.46,0.46,0.37,0.33,0.32,0.32,0.34,0.32,0.35,0.3,0.37,0.3,0.31,0.27,0.3,0.34,0.3,0.3,0.23,0.23,0.23,0.3,0.31,0.36,0.41,0.43,0.46,0.45,0.44,0.45,0.43,0.36,0.44,0.35,0.41,0.47,0.44,0.44,0.44,0.52,0.44,0.36,0.27,0.26,0.23,0.25,0.22,0.13,0.08,0.08,0.07,0.08,0.08,0.05,0.05,0.03,0.03,0.03,0.02,0.01,0.01,0.01,0.02,0.03,0.01,0.02,0.02,0.02,0.03,0.03,0.02,0.02,0.02,0.03,0.05,0.08,0.12,0.11,0.11,0.17,0.26,0.25,0.32,0.26,0.26,0.36,0.35,0.34,0.32,0.33,0.41,0.48,0.45,0.51,0.48,0.48,0.45,0.51,0.57,0.61,0.64,0.68,0.7,0.76,0.85,0.89,0.91]}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":151,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.38,0.38,0.4,0.4,0.41,0.43,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.42,0.42,0.42,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.42,0.42,0.42,0.42,0.42,0.41,0.41,0.41,0.4,0.39,0.39,0.38,0.38,0.37,0.36,0.36,0.37,0.37,0.37,0.38,0.38,0.38,0.38,0.39,0.4,0.41,0.42,0.43,0.43,0.42,0.41,0.4,0.4,0.4,0.4,0.39,0.39,0.39,0.38,0.38,0.38,0.38,0.38,0.38,0.38,0.39,0.4,0.41,0.43,0.41,0.38,0.35,0.32,0.3,0.28,0.27,0.26,0.26,0.25,0.25,0.25,0.25,0.25,0.25,0.25,0.25,0.26,0.27,0.28,0.3,0.31,0.33,0.34,0.36,0.38,0.41,0.43,0.43,0.42,0.41,0.39,0.38,0.36,0.35,0.34,0.34,0.35,0.35,0.34,0.34,0.35,0.36,0.38,0.39,0.39,0.41,0.42,0.42,0.42,0.4,0.38,0.37,0.36,0.34,0.33,0.31,0.3,0.3,0.3,0.31,0.32,0.33,0.34,0.34,0.34,0.34,0.34,0.34,0.33,0.32,0.31,0.3,0.31,0.32,0.33,0.35,0.37]}]},{"key":"cath","label":"CATH","kind":"range","features":[{"begin":3,"end":151,"feature_id":"2.40.250.10","type":"CATH","name":"Core binding factor, beta subunit","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"CATH","original_begin":3,"original_end":151}]},{"key":"scop","label":"SCOP","kind":"range","features":[{"begin":4,"end":141,"feature_id":"8042548","type":"SCOP_2_B_SUPERFAMILY","name":"Core binding factor beta, CBF","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"SCOP2B","original_begin":4,"original_end":141}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":3,"end":151,"feature_id":"e6nilH1","type":"ECOD","name":"Parvo_coat","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"ECOD","original_begin":3,"original_end":151}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":1,"end":151,"feature_id":"PRO_0000058301","type":"CHAIN","name":null,"description":"Core-binding factor subunit beta","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":1,"original_end":151}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":35,"end":43,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to promote ubiquitination and degradation of APOBEC3F following interaction with HIV-1 Vif. Does not affect ability to promote ubiquitination and degradation of APOBEC3G following interaction with HIV-1 Vif.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":35,"original_end":43},{"begin":54,"end":54,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to promote ubiquitination and degradation of APOBEC3F following interaction with HIV-1 Vif. Does not affect ability to promote ubiquitination and degradation of APOBEC3G following interaction with HIV-1 Vif.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":54,"original_end":54},{"begin":100,"end":100,"feature_id":"VAR_036226","type":"SEQUENCE_VARIANT","name":null,"description":"In a breast cancer sample; somatic mutation; dbSNP:rs1280921900.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":100,"original_end":100}]},{"key":"other_plane_outliers","label":"PLANE_OUTLIERS","kind":"numeric_series","features":[{"begin":40,"end":40,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":40,"original_end":null,"values":[1.0]},{"begin":144,"end":144,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":144,"original_end":null,"values":[1.0]}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"range","features":[{"begin":83,"end":151,"feature_id":"VAR_087753","type":"SEQUENCE_VARIANT","name":null,"description":"In CLCD2.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":83,"original_end":151}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":1,"end":2,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":1,"original_end":2},{"begin":74,"end":82,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.H","provenance_source":"PDB","original_begin":74,"original_end":82}]}]},{"instance_id":"6NIL.E","entity_id":"2","label_asym_id":"E","auth_asym_id":"E","description":"Core-binding factor subunit beta","polymer_type":"polypeptide(L)","sequence":{"value":"MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTR","length":151},"alignments":[{"source":"UNIPROT","target_id":"Q13951","target_sequence":"MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQLLAVTGKKTTRP","query_coverage":1.0,"query_length":151,"target_coverage":0.8296703296703297,"target_length":182,"orientation":null,"regions":[{"query_begin":1,"query_end":151,"target_begin":1,"target_end":151,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":5,"end":15,"feature_id":"HELX_P23","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":5,"original_end":15},{"begin":15,"end":22,"feature_id":"HELX_P24","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":15,"original_end":22},{"begin":26,"end":27,"feature_id":"AA8","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":26,"original_end":27},{"begin":39,"end":50,"feature_id":"HELX_P25","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":39,"original_end":50},{"begin":56,"end":58,"feature_id":"AB1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":56,"original_end":58},{"begin":56,"end":58,"feature_id":"AA9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":56,"original_end":58},{"begin":64,"end":70,"feature_id":"AB1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":64,"original_end":70},{"begin":64,"end":70,"feature_id":"AA9","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":64,"original_end":70},{"begin":85,"end":91,"feature_id":"AA8","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":85,"original_end":91},{"begin":94,"end":103,"feature_id":"AA8","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":94,"original_end":103},{"begin":106,"end":115,"feature_id":"AA8","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":106,"original_end":115},{"begin":121,"end":127,"feature_id":"AA8","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":121,"original_end":127},{"begin":130,"end":134,"feature_id":"HELX_P26","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":130,"original_end":134},{"begin":140,"end":144,"feature_id":"HELX_P27","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PROMOTIF","original_begin":140,"original_end":144}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":11,"end":11,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":11,"original_end":null,"values":[2.0]},{"begin":16,"end":16,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":16,"original_end":null,"values":[1.0]},{"begin":19,"end":19,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":19,"original_end":null,"values":[1.0]},{"begin":21,"end":21,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":21,"original_end":null,"values":[1.0]},{"begin":32,"end":32,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":32,"original_end":null,"values":[1.0]},{"begin":35,"end":35,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":35,"original_end":null,"values":[1.0]},{"begin":67,"end":67,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":67,"original_end":null,"values":[2.0]},{"begin":83,"end":84,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[1.0,1.0]},{"begin":100,"end":100,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":100,"original_end":null,"values":[2.0]},{"begin":109,"end":110,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":109,"original_end":null,"values":[1.0,2.0]},{"begin":125,"end":125,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":125,"original_end":null,"values":[3.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":3,"end":73,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":3,"original_end":null,"values":[0.091,0.254,-0.035,0.351,0.185,0.242,0.381,0.142,0.313,0.244,0.283,0.042,0.189,0.235,0.5,0.391,0.208,0.448,0.432,0.156,0.142,0.195,0.384,0.401,0.442,0.423,0.459,0.464,0.434,0.475,0.399,0.28,0.479,0.45,0.458,0.211,0.239,0.513,0.38,0.358,0.463,0.415,0.252,0.415,0.347,0.324,0.15,0.262,0.454,0.456,0.506,0.372,0.453,0.479,0.508,0.445,0.488,0.414,0.446,0.4,0.422,0.439,0.445,0.483,0.394,0.531,0.453,0.483,0.403,0.36,0.578]},{"begin":83,"end":151,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[0.232,0.329,0.461,0.416,0.192,0.145,0.419,0.332,0.464,0.4,0.317,0.48,0.395,0.348,0.349,0.412,0.471,0.309,0.501,0.414,0.387,0.463,0.419,0.209,0.398,0.475,0.435,0.511,0.397,0.365,0.499,0.317,0.106,0.474,0.327,0.387,0.45,0.414,0.331,0.326,0.409,0.44,0.281,0.253,0.357,0.393,0.312,0.334,0.216,0.419,0.336,0.011,0.384,0.168,-0.069,0.229,0.172,0.335,-0.035,0.264,0.185,0.206,0.046,0.334,0.261,0.139,0.287,-0.005,0.208]}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":3,"end":73,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":3,"original_end":null,"values":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25,0,0,0,0,0,0,0,0,0,0,0,0,0.69,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":147,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-0.99,-1.29,-1.54,-0.73,-1.59,-2.44,-2.66,-2.66,-1.96,-1.14,-1.56,-1.56,-1.44,-1.14,-1.26,-1.26,-0.59,-1.29,-1.1,-1.03,-0.74,-1.24,-1.2,-0.39,-0.5,-1.17,-1.28,-1.96,-1.88,-2.12,-2.43,-2.89,-3.59,-2.89,-3.0,-2.19,-2.4,-2.43,-1.84,-1.18,-1.18,-1.18,-1.42,-1.42,-1.82,-1.82,-0.93,-0.93,-0.9,0.07,0.66,0.62,1.08,1.09,1.09,1.01,0.72,0.83,-0.02,0.09,0.48,0.34,0.62,0.92,0.4,0.1,-0.37,-0.37,-1.07,-1.88,-2.09,-2.37,-2.46,-2.44,-2.56,-2.9,-2.66,-1.8,-1.69,-0.88,-1.19,-1.51,-1.81,-1.11,-0.77,-1.06,-1.06,-0.81,-0.81,-0.86,-0.16,0.06,0.07,0.61,1.47,0.61,0.71,0.76,1.47,1.73,2.41,2.1,1.17,0.7,0.99,1.53,0.68,0.82,-0.03,-1.03,-0.51,-0.47,-0.47,-0.16,-0.7,-0.03,-0.03,-0.03,0.78,-0.03,-0.03,-0.38,-1.09,-0.84,-1.51,-2.32,-2.32,-3.02,-2.43,-1.62,-1.03,-0.92,-1.51,-0.92,-0.22,-0.22,-0.22,-0.22,-1.14,-1.84,-1.96,-1.64,-2.34]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":151,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.94,0.87,0.84,0.8,0.76,0.71,0.63,0.53,0.48,0.43,0.34,0.36,0.32,0.33,0.3,0.35,0.29,0.28,0.22,0.24,0.24,0.19,0.25,0.26,0.24,0.28,0.27,0.33,0.39,0.39,0.41,0.44,0.43,0.36,0.38,0.46,0.44,0.4,0.39,0.45,0.45,0.44,0.5,0.51,0.46,0.46,0.37,0.33,0.32,0.32,0.34,0.32,0.35,0.3,0.37,0.3,0.31,0.27,0.3,0.34,0.3,0.3,0.23,0.23,0.23,0.3,0.31,0.36,0.41,0.43,0.46,0.45,0.44,0.45,0.43,0.36,0.44,0.35,0.41,0.47,0.44,0.44,0.44,0.52,0.44,0.36,0.27,0.26,0.23,0.25,0.22,0.13,0.08,0.08,0.07,0.08,0.08,0.05,0.05,0.03,0.03,0.03,0.02,0.01,0.01,0.01,0.02,0.03,0.01,0.02,0.02,0.02,0.03,0.03,0.02,0.02,0.02,0.03,0.05,0.08,0.12,0.11,0.11,0.17,0.26,0.25,0.32,0.26,0.26,0.36,0.35,0.34,0.32,0.33,0.41,0.48,0.45,0.51,0.48,0.48,0.45,0.51,0.57,0.61,0.64,0.68,0.7,0.76,0.85,0.89,0.91]}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":151,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.38,0.38,0.4,0.4,0.41,0.43,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.42,0.42,0.42,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.42,0.42,0.42,0.42,0.42,0.41,0.41,0.41,0.4,0.39,0.39,0.38,0.38,0.37,0.36,0.36,0.37,0.37,0.37,0.38,0.38,0.38,0.38,0.39,0.4,0.41,0.42,0.43,0.43,0.42,0.41,0.4,0.4,0.4,0.4,0.39,0.39,0.39,0.38,0.38,0.38,0.38,0.38,0.38,0.38,0.39,0.4,0.41,0.43,0.41,0.38,0.35,0.32,0.3,0.28,0.27,0.26,0.26,0.25,0.25,0.25,0.25,0.25,0.25,0.25,0.25,0.26,0.27,0.28,0.3,0.31,0.33,0.34,0.36,0.38,0.41,0.43,0.43,0.42,0.41,0.39,0.38,0.36,0.35,0.34,0.34,0.35,0.35,0.34,0.34,0.35,0.36,0.38,0.39,0.39,0.41,0.42,0.42,0.42,0.4,0.38,0.37,0.36,0.34,0.33,0.31,0.3,0.3,0.3,0.31,0.32,0.33,0.34,0.34,0.34,0.34,0.34,0.34,0.33,0.32,0.31,0.3,0.31,0.32,0.33,0.35,0.37]}]},{"key":"cath","label":"CATH","kind":"range","features":[{"begin":3,"end":151,"feature_id":"2.40.250.10","type":"CATH","name":"Core binding factor, beta subunit","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"CATH","original_begin":3,"original_end":151}]},{"key":"scop","label":"SCOP","kind":"range","features":[{"begin":4,"end":141,"feature_id":"8042548","type":"SCOP_2_B_SUPERFAMILY","name":"Core binding factor beta, CBF","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"SCOP2B","original_begin":4,"original_end":141}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":3,"end":151,"feature_id":"e6nilE1","type":"ECOD","name":"Parvo_coat","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"ECOD","original_begin":3,"original_end":151}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":1,"end":151,"feature_id":"PRO_0000058301","type":"CHAIN","name":null,"description":"Core-binding factor subunit beta","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":1,"original_end":151}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":35,"end":43,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to promote ubiquitination and degradation of APOBEC3F following interaction with HIV-1 Vif. Does not affect ability to promote ubiquitination and degradation of APOBEC3G following interaction with HIV-1 Vif.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":35,"original_end":43},{"begin":54,"end":54,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to promote ubiquitination and degradation of APOBEC3F following interaction with HIV-1 Vif. Does not affect ability to promote ubiquitination and degradation of APOBEC3G following interaction with HIV-1 Vif.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":54,"original_end":54},{"begin":100,"end":100,"feature_id":"VAR_036226","type":"SEQUENCE_VARIANT","name":null,"description":"In a breast cancer sample; somatic mutation; dbSNP:rs1280921900.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":100,"original_end":100}]},{"key":"other_plane_outliers","label":"PLANE_OUTLIERS","kind":"numeric_series","features":[{"begin":40,"end":40,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":40,"original_end":null,"values":[1.0]},{"begin":144,"end":144,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":144,"original_end":null,"values":[1.0]}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"range","features":[{"begin":83,"end":151,"feature_id":"VAR_087753","type":"SEQUENCE_VARIANT","name":null,"description":"In CLCD2.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":83,"original_end":151}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":1,"end":2,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":1,"original_end":2},{"begin":74,"end":82,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.E","provenance_source":"PDB","original_begin":74,"original_end":82}]}]},{"instance_id":"6NIL.B","entity_id":"2","label_asym_id":"B","auth_asym_id":"B","description":"Core-binding factor subunit beta","polymer_type":"polypeptide(L)","sequence":{"value":"MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTR","length":151},"alignments":[{"source":"UNIPROT","target_id":"Q13951","target_sequence":"MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQLLAVTGKKTTRP","query_coverage":1.0,"query_length":151,"target_coverage":0.8296703296703297,"target_length":182,"orientation":null,"regions":[{"query_begin":1,"query_end":151,"target_begin":1,"target_end":151,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":5,"end":15,"feature_id":"HELX_P8","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":5,"original_end":15},{"begin":15,"end":22,"feature_id":"HELX_P9","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":15,"original_end":22},{"begin":26,"end":27,"feature_id":"AA3","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":26,"original_end":27},{"begin":39,"end":50,"feature_id":"HELX_P10","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":39,"original_end":50},{"begin":56,"end":58,"feature_id":"AA5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":56,"original_end":58},{"begin":56,"end":58,"feature_id":"AA4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":56,"original_end":58},{"begin":64,"end":70,"feature_id":"AA5","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":64,"original_end":70},{"begin":64,"end":70,"feature_id":"AA4","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":64,"original_end":70},{"begin":85,"end":91,"feature_id":"AA3","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":85,"original_end":91},{"begin":94,"end":103,"feature_id":"AA3","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":94,"original_end":103},{"begin":106,"end":115,"feature_id":"AA3","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":106,"original_end":115},{"begin":121,"end":127,"feature_id":"AA3","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":121,"original_end":127},{"begin":130,"end":134,"feature_id":"HELX_P11","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":130,"original_end":134},{"begin":140,"end":144,"feature_id":"HELX_P12","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PROMOTIF","original_begin":140,"original_end":144}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":11,"end":11,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":11,"original_end":null,"values":[2.0]},{"begin":16,"end":16,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":16,"original_end":null,"values":[1.0]},{"begin":19,"end":19,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":19,"original_end":null,"values":[1.0]},{"begin":21,"end":21,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":21,"original_end":null,"values":[1.0]},{"begin":32,"end":32,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":32,"original_end":null,"values":[1.0]},{"begin":35,"end":35,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":35,"original_end":null,"values":[1.0]},{"begin":67,"end":67,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":67,"original_end":null,"values":[2.0]},{"begin":83,"end":84,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[1.0,1.0]},{"begin":100,"end":100,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":100,"original_end":null,"values":[2.0]},{"begin":109,"end":110,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":109,"original_end":null,"values":[1.0,1.0]},{"begin":125,"end":125,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":125,"original_end":null,"values":[2.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":3,"end":73,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":3,"original_end":null,"values":[0.084,0.282,-0.027,0.352,0.22,0.244,0.383,0.138,0.281,0.268,0.302,0.007,0.17,0.234,0.488,0.386,0.195,0.447,0.441,0.216,0.133,0.212,0.394,0.398,0.448,0.412,0.476,0.441,0.383,0.495,0.401,0.275,0.481,0.426,0.459,0.23,0.208,0.522,0.364,0.389,0.436,0.418,0.286,0.417,0.348,0.289,0.133,0.255,0.455,0.447,0.547,0.344,0.462,0.461,0.507,0.396,0.481,0.406,0.444,0.407,0.421,0.445,0.459,0.465,0.393,0.555,0.457,0.479,0.405,0.335,0.575]},{"begin":83,"end":151,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":83,"original_end":null,"values":[0.202,0.364,0.458,0.37,0.233,0.144,0.433,0.353,0.46,0.413,0.283,0.479,0.377,0.354,0.353,0.421,0.47,0.326,0.471,0.419,0.369,0.444,0.433,0.291,0.408,0.486,0.44,0.521,0.421,0.405,0.529,0.304,0.127,0.498,0.4,0.404,0.438,0.411,0.309,0.373,0.357,0.452,0.301,0.277,0.374,0.42,0.332,0.381,0.215,0.417,0.311,0.041,0.372,0.175,-0.08,0.238,0.211,0.361,-0.028,0.236,0.198,0.213,0.029,0.356,0.265,0.174,0.282,-0.006,0.217]}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":3,"end":73,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":3,"original_end":null,"values":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25,0,0,0,0,0,0,0,0,0,0,0,0,0.69,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":147,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-0.99,-1.29,-1.54,-0.73,-1.59,-2.44,-2.66,-2.66,-1.96,-1.14,-1.56,-1.56,-1.44,-1.14,-1.26,-1.26,-0.59,-1.29,-1.1,-1.03,-0.74,-1.24,-1.2,-0.39,-0.5,-1.17,-1.28,-1.96,-1.88,-2.12,-2.43,-2.89,-3.59,-2.89,-3.0,-2.19,-2.4,-2.43,-1.84,-1.18,-1.18,-1.18,-1.42,-1.42,-1.82,-1.82,-0.93,-0.93,-0.9,0.07,0.66,0.62,1.08,1.09,1.09,1.01,0.72,0.83,-0.02,0.09,0.48,0.34,0.62,0.92,0.4,0.1,-0.37,-0.37,-1.07,-1.88,-2.09,-2.37,-2.46,-2.44,-2.56,-2.9,-2.66,-1.8,-1.69,-0.88,-1.19,-1.51,-1.81,-1.11,-0.77,-1.06,-1.06,-0.81,-0.81,-0.86,-0.16,0.06,0.07,0.61,1.47,0.61,0.71,0.76,1.47,1.73,2.41,2.1,1.17,0.7,0.99,1.53,0.68,0.82,-0.03,-1.03,-0.51,-0.47,-0.47,-0.16,-0.7,-0.03,-0.03,-0.03,0.78,-0.03,-0.03,-0.38,-1.09,-0.84,-1.51,-2.32,-2.32,-3.02,-2.43,-1.62,-1.03,-0.92,-1.51,-0.92,-0.22,-0.22,-0.22,-0.22,-1.14,-1.84,-1.96,-1.64,-2.34]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":151,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.94,0.87,0.84,0.8,0.76,0.71,0.63,0.53,0.48,0.43,0.34,0.36,0.32,0.33,0.3,0.35,0.29,0.28,0.22,0.24,0.24,0.19,0.25,0.26,0.24,0.28,0.27,0.33,0.39,0.39,0.41,0.44,0.43,0.36,0.38,0.46,0.44,0.4,0.39,0.45,0.45,0.44,0.5,0.51,0.46,0.46,0.37,0.33,0.32,0.32,0.34,0.32,0.35,0.3,0.37,0.3,0.31,0.27,0.3,0.34,0.3,0.3,0.23,0.23,0.23,0.3,0.31,0.36,0.41,0.43,0.46,0.45,0.44,0.45,0.43,0.36,0.44,0.35,0.41,0.47,0.44,0.44,0.44,0.52,0.44,0.36,0.27,0.26,0.23,0.25,0.22,0.13,0.08,0.08,0.07,0.08,0.08,0.05,0.05,0.03,0.03,0.03,0.02,0.01,0.01,0.01,0.02,0.03,0.01,0.02,0.02,0.02,0.03,0.03,0.02,0.02,0.02,0.03,0.05,0.08,0.12,0.11,0.11,0.17,0.26,0.25,0.32,0.26,0.26,0.36,0.35,0.34,0.32,0.33,0.41,0.48,0.45,0.51,0.48,0.48,0.45,0.51,0.57,0.61,0.64,0.68,0.7,0.76,0.85,0.89,0.91]}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":151,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_2","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.38,0.38,0.4,0.4,0.41,0.43,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.42,0.42,0.42,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.42,0.42,0.42,0.42,0.42,0.41,0.41,0.41,0.4,0.39,0.39,0.38,0.38,0.37,0.36,0.36,0.37,0.37,0.37,0.38,0.38,0.38,0.38,0.39,0.4,0.41,0.42,0.43,0.43,0.42,0.41,0.4,0.4,0.4,0.4,0.39,0.39,0.39,0.38,0.38,0.38,0.38,0.38,0.38,0.38,0.39,0.4,0.41,0.43,0.41,0.38,0.35,0.32,0.3,0.28,0.27,0.26,0.26,0.25,0.25,0.25,0.25,0.25,0.25,0.25,0.25,0.26,0.27,0.28,0.3,0.31,0.33,0.34,0.36,0.38,0.41,0.43,0.43,0.42,0.41,0.39,0.38,0.36,0.35,0.34,0.34,0.35,0.35,0.34,0.34,0.35,0.36,0.38,0.39,0.39,0.41,0.42,0.42,0.42,0.4,0.38,0.37,0.36,0.34,0.33,0.31,0.3,0.3,0.3,0.31,0.32,0.33,0.34,0.34,0.34,0.34,0.34,0.34,0.33,0.32,0.31,0.3,0.31,0.32,0.33,0.35,0.37]}]},{"key":"cath","label":"CATH","kind":"range","features":[{"begin":3,"end":151,"feature_id":"2.40.250.10","type":"CATH","name":"Core binding factor, beta subunit","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"CATH","original_begin":3,"original_end":151}]},{"key":"scop","label":"SCOP","kind":"range","features":[{"begin":4,"end":141,"feature_id":"8042548","type":"SCOP_2_B_SUPERFAMILY","name":"Core binding factor beta, CBF","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"SCOP2B","original_begin":4,"original_end":141}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":3,"end":151,"feature_id":"e6nilB1","type":"ECOD","name":"Interfer-bind","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"ECOD","original_begin":3,"original_end":151}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":1,"end":151,"feature_id":"PRO_0000058301","type":"CHAIN","name":null,"description":"Core-binding factor subunit beta","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":1,"original_end":151}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":35,"end":43,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to promote ubiquitination and degradation of APOBEC3F following interaction with HIV-1 Vif. Does not affect ability to promote ubiquitination and degradation of APOBEC3G following interaction with HIV-1 Vif.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":35,"original_end":43},{"begin":54,"end":54,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished ability to promote ubiquitination and degradation of APOBEC3F following interaction with HIV-1 Vif. Does not affect ability to promote ubiquitination and degradation of APOBEC3G following interaction with HIV-1 Vif.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":54,"original_end":54},{"begin":100,"end":100,"feature_id":"VAR_036226","type":"SEQUENCE_VARIANT","name":null,"description":"In a breast cancer sample; somatic mutation; dbSNP:rs1280921900.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":100,"original_end":100}]},{"key":"other_plane_outliers","label":"PLANE_OUTLIERS","kind":"numeric_series","features":[{"begin":40,"end":40,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":40,"original_end":null,"values":[1.0]},{"begin":144,"end":144,"feature_id":"PLANE_OUTLIERS","type":"PLANE_OUTLIERS","name":"PLANE_OUTLIERS","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":144,"original_end":null,"values":[1.0]}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"range","features":[{"begin":83,"end":151,"feature_id":"VAR_087753","type":"SEQUENCE_VARIANT","name":null,"description":"In CLCD2.","value":null,"source":"UNIPROT","source_id":"Q13951","provenance_source":null,"original_begin":83,"original_end":151}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":1,"end":2,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":1,"original_end":2},{"begin":74,"end":82,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.B","provenance_source":"PDB","original_begin":74,"original_end":82}]}]},{"instance_id":"6NIL.J","entity_id":"1","label_asym_id":"J","auth_asym_id":"J","description":"DNA dC->dU-editing enzyme APOBEC-3F","polymer_type":"polypeptide(L)","sequence":{"value":"MGSSHHHHHHSQDPNSMGKEILRNPMEAMDPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETGRHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIKTARLYYFKDTDAAEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWDGLDYNFLDLDSKLQEILE","length":207},"alignments":[{"source":"UNIPROT","target_id":"Q8IUX4","target_sequence":"MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE","query_coverage":0.9130434782608695,"query_length":207,"target_coverage":0.5067024128686327,"target_length":373,"orientation":null,"regions":[{"query_begin":19,"query_end":207,"target_begin":185,"target_end":373,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":30,"end":38,"feature_id":"HELX_P46","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":30,"original_end":38},{"begin":52,"end":60,"feature_id":"AB7","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":52,"original_end":60},{"begin":68,"end":72,"feature_id":"AB7","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":68,"original_end":72},{"begin":83,"end":93,"feature_id":"HELX_P47","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":83,"original_end":93},{"begin":101,"end":104,"feature_id":"AB7","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":101,"original_end":104},{"begin":117,"end":128,"feature_id":"HELX_P48","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":117,"original_end":128},{"begin":136,"end":137,"feature_id":"AB8","type":"SHEET","name":"sheet","description":"parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":136,"original_end":137},{"begin":145,"end":155,"feature_id":"HELX_P49","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":145,"original_end":155},{"begin":156,"end":159,"feature_id":"HELX_P50","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":156,"original_end":159},{"begin":163,"end":164,"feature_id":"AB8","type":"SHEET","name":"sheet","description":"parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":163,"original_end":164},{"begin":166,"end":178,"feature_id":"HELX_P51","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":166,"original_end":178},{"begin":190,"end":204,"feature_id":"HELX_P52","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PROMOTIF","original_begin":190,"original_end":204}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":30,"end":30,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":30,"original_end":null,"values":[1.0]},{"begin":103,"end":103,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":103,"original_end":null,"values":[1.0]},{"begin":114,"end":115,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":114,"original_end":null,"values":[1.0,1.0]},{"begin":131,"end":131,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":131,"original_end":null,"values":[1.0]},{"begin":150,"end":150,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":150,"original_end":null,"values":[1.0]},{"begin":153,"end":153,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":153,"original_end":null,"values":[1.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":24,"end":74,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":24,"original_end":null,"values":[0.558,0.521,0.476,0.399,0.573,0.433,0.071,0.463,0.409,0.388,0.445,0.518,0.274,0.55,0.514,0.339,0.457,0.419,0.377,0.152,0.349,0.266,0.176,-0.028,0.294,0.302,0.506,0.453,0.49,0.505,0.454,0.455,0.454,0.513,0.462,0.499,0.459,0.393,0.34,0.513,0.413,0.481,0.479,0.429,0.555,0.494,0.482,0.454,0.571,0.487,0.556]},{"begin":82,"end":207,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":82,"original_end":null,"values":[0.385,0.382,0.474,0.44,0.423,0.448,0.419,0.473,0.426,0.475,0.428,0.571,0.435,0.382,0.395,0.506,0.43,0.54,0.437,0.452,0.487,0.538,0.515,0.489,0.533,0.564,0.479,0.469,0.356,0.407,0.465,0.547,0.416,0.238,0.375,0.371,0.43,0.27,0.395,0.421,0.398,0.057,0.381,0.294,0.412,0.526,0.503,0.334,0.388,0.471,0.41,0.472,0.467,0.434,0.53,0.415,0.499,0.425,0.44,0.407,0.193,0.246,0.402,0.333,0.278,0.411,0.231,-0.028,0.168,0.204,0.491,0.159,0.189,0.327,0.399,0.198,0.199,0.469,0.53,0.506,0.475,0.414,0.372,0.359,0.476,0.427,0.384,0.346,0.387,0.464,0.434,0.458,0.482,0.368,0.43,0.42,0.333,0.539,0.416,0.31,0.448,0.332,0.356,0.329,0.155,0.479,0.441,0.317,0.307,0.347,0.336,0.298,0.403,0.445,0.441,0.261,0.201,0.456,0.378,0.455,0.264,0.341,0.162,0.234,0.325,0.277]}]},{"key":"binding_site_zn","label":"BINDING SITE ZN","kind":"point","features":[{"begin":83,"end":83,"feature_id":"LIGAND_INTERACTION_4","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance P","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":83,"original_end":83},{"begin":85,"end":85,"feature_id":"LIGAND_INTERACTION_4","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance P","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":85,"original_end":85},{"begin":114,"end":114,"feature_id":"LIGAND_INTERACTION_4","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance P","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":114,"original_end":114},{"begin":117,"end":117,"feature_id":"LIGAND_INTERACTION_4","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance P","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":117,"original_end":117}]},{"key":"metal_coordination_zn","label":"METAL COORDINATION ZN","kind":"point","features":[{"begin":114,"end":114,"feature_id":"LIGAND_METAL_COORDINATION_LINKAGE_4","type":"LIGAND_METAL_COORDINATION_LINKAGE","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance P","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":114,"original_end":114},{"begin":117,"end":117,"feature_id":"LIGAND_METAL_COORDINATION_LINKAGE_4","type":"LIGAND_METAL_COORDINATION_LINKAGE","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance P","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":117,"original_end":117}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":24,"end":74,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":24,"original_end":null,"values":[0,0,0,0,0,5.37,0,0,0,0,0,0,0,0,1.25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26,0,1.79,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":203,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-1.79,-2.36,-2.4,-2.7,-3.0,-2.82,-2.86,-2.59,-2.02,-1.71,-1.79,-2.09,-1.2,-0.39,-0.71,-0.71,-0.8,-0.8,-1.14,-0.51,0.09,-0.8,-1.4,-1.26,-0.37,0.12,-0.23,0.47,-0.09,0.01,-0.03,-0.24,0.53,-0.47,-1.21,-0.87,-1.32,-1.01,-1.82,-1.78,-1.78,-2.29,-1.89,-1.03,-0.96,-0.5,-0.53,0.18,0.18,1.03,1.59,1.26,0.48,-0.16,-0.56,-0.66,-0.4,-0.1,-0.67,-1.57,-1.63,-1.32,-0.5,-0.1,-0.42,-1.28,-1.58,-1.01,-0.97,-0.64,-0.99,-1.53,-1.89,-1.89,-1.86,-1.27,-2.12,-2.23,-1.78,-1.08,-0.58,-0.62,-0.22,0.44,0.52,0.52,0.63,0.86,0.97,0.46,0.37,0.08,-0.31,-0.98,-0.73,-0.73,-0.77,-1.27,-1.28,-1.24,-0.93,-0.94,-0.66,-0.6,-0.39,-0.58,-0.68,-0.97,-0.54,-0.27,-0.22,-0.51,0.04,0.42,-0.24,0.24,1.06,0.98,0.28,-0.03,0.27,-0.59,-0.32,-0.32,-0.21,-0.71,-0.41,-0.34,-0.07,0.22,0.11,0.07,0.31,-0.26,0.13,-0.8,-0.76,-0.76,-1.34,-0.64,-0.87,-1.11,-1.01,-0.9,-0.97,-0.67,-0.17,0.13,-0.46,-1.04,-0.7,-0.46,-0.97,0.0,-0.3,-0.22,0.08,0.42,0.67,0.28,-0.31,0.09,-0.81,-0.57,-0.79,-1.1,-1.44,-1.69,-0.94,-0.09,-0.54,-0.5,-0.74,-1.41,-1.7,-1.49,-0.79,-1.53,-2.18,-2.13,-2.13,-1.79,-0.98,-0.98,-0.94,-1.64,-0.9,-0.3,-0.59,0.22,-0.12,-0.63,-0.68,-0.11,-0.11,-0.81,-0.73,0.08,-0.73]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":207,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.99,0.99,0.98,0.98,0.97,0.96,0.92,0.9,0.89,0.86,0.79,0.75,0.75,0.74,0.75,0.71,0.71,0.68,0.64,0.63,0.64,0.63,0.53,0.45,0.34,0.25,0.24,0.19,0.19,0.17,0.11,0.13,0.18,0.15,0.09,0.08,0.09,0.09,0.1,0.12,0.07,0.04,0.03,0.02,0.03,0.04,0.07,0.05,0.06,0.06,0.06,0.09,0.09,0.1,0.08,0.14,0.08,0.09,0.07,0.08,0.06,0.06,0.09,0.13,0.21,0.16,0.2,0.22,0.28,0.34,0.34,0.33,0.31,0.29,0.28,0.31,0.24,0.26,0.2,0.21,0.15,0.13,0.11,0.13,0.13,0.1,0.1,0.1,0.1,0.09,0.09,0.08,0.05,0.07,0.05,0.05,0.04,0.03,0.05,0.08,0.05,0.07,0.13,0.15,0.15,0.16,0.12,0.13,0.13,0.13,0.09,0.08,0.09,0.09,0.06,0.07,0.06,0.09,0.13,0.13,0.1,0.14,0.1,0.09,0.11,0.09,0.09,0.13,0.15,0.1,0.06,0.06,0.04,0.04,0.06,0.09,0.11,0.1,0.09,0.1,0.09,0.09,0.08,0.12,0.07,0.11,0.12,0.13,0.15,0.13,0.18,0.19,0.27,0.29,0.25,0.24,0.17,0.16,0.2,0.16,0.14,0.1,0.1,0.06,0.07,0.12,0.07,0.05,0.03,0.03,0.04,0.04,0.07,0.08,0.07,0.08,0.1,0.08,0.1,0.09,0.09,0.1,0.1,0.14,0.15,0.09,0.09,0.09,0.14,0.2,0.18,0.11,0.11,0.12,0.06,0.07,0.1,0.1,0.21,0.24,0.29,0.41,0.45,0.57,0.61,0.73,0.84]}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":207,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.56,0.54,0.53,0.51,0.5,0.48,0.47,0.46,0.45,0.44,0.43,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.4,0.41,0.4,0.38,0.37,0.35,0.33,0.31,0.3,0.29,0.29,0.3,0.3,0.31,0.33,0.35,0.37,0.4,0.43,0.41,0.39,0.38,0.37,0.35,0.32,0.31,0.29,0.28,0.27,0.26,0.25,0.23,0.22,0.21,0.21,0.2,0.2,0.2,0.2,0.2,0.19,0.19,0.2,0.19,0.17,0.16,0.16,0.15,0.13,0.12,0.11,0.11,0.11,0.11,0.11,0.11,0.11,0.12,0.13,0.16,0.19,0.21,0.23,0.22,0.22,0.23,0.24,0.25,0.25,0.24,0.23,0.22,0.22,0.23,0.24,0.26,0.26,0.25,0.24,0.21,0.19,0.18,0.17,0.14,0.12,0.11,0.11,0.11,0.11,0.12,0.13,0.15,0.17,0.17,0.19,0.2,0.2,0.19,0.18,0.17,0.16,0.15,0.16,0.16,0.17,0.18,0.19,0.19,0.21,0.23,0.25,0.27,0.28,0.29,0.29,0.27,0.27,0.26,0.26,0.25,0.24,0.23,0.21,0.2,0.19,0.19,0.2,0.19,0.2,0.19,0.19,0.19,0.19,0.2,0.2,0.21,0.21,0.21,0.21,0.21,0.22,0.23,0.23,0.25,0.26,0.27,0.28,0.28,0.29,0.3,0.31,0.32,0.32,0.33,0.33,0.33,0.32,0.31,0.32,0.33,0.33,0.32,0.31,0.29,0.27,0.25,0.25,0.24,0.23,0.22,0.2,0.18,0.18,0.19,0.19,0.19,0.2,0.19,0.19]}]},{"key":"pfam","label":"PFAM","kind":"range","features":[{"begin":34,"end":204,"feature_id":"PF08210","type":"PFAM","name":"Activation-induced cytidine deaminase (AID) (AID)","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"Pfam","original_begin":34,"original_end":204}]},{"key":"scop","label":"SCOP","kind":"range","features":[{"begin":24,"end":207,"feature_id":"8105527","type":"SCOP_2_B_SUPERFAMILY","name":"Cytidine deaminase-like","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"SCOP2B","original_begin":24,"original_end":207}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":24,"end":186,"feature_id":"e6nilJ1","type":"ECOD","name":"Parvo_coat","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"ECOD","original_begin":24,"original_end":186}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":19,"end":207,"feature_id":"PRO_0000171757","type":"CHAIN","name":null,"description":"DNA dC->dU-editing enzyme APOBEC-3F","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373},{"begin":68,"end":68,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":234,"original_end":234},{"begin":168,"end":168,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":334,"original_end":334},{"begin":186,"end":186,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":352,"original_end":352},{"begin":189,"end":189,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":355,"original_end":355},{"begin":192,"end":192,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":358,"original_end":358}]},{"key":"active_site","label":"ACTIVE SITE","kind":"point","features":[{"begin":85,"end":85,"feature_id":null,"type":"ACTIVE_SITE","name":null,"description":"Proton donor","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":30,"end":30,"feature_id":"monomer_feature_1","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":30,"original_end":30},{"begin":81,"end":81,"feature_id":"monomer_feature_2","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":81,"original_end":81},{"begin":82,"end":82,"feature_id":"monomer_feature_3","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":82,"original_end":82},{"begin":83,"end":83,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":249,"original_end":249},{"begin":83,"end":83,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Nearly abolished antiviral activity; when associated with R-65.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":249,"original_end":249},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with Q-67.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Decrease in cytidine deaminase and antiviral activity.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Decrease in cytidine deaminase and antiviral activity; when associated with A-67.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Remains able to bind Vif.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":89,"end":89,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":255,"original_end":255},{"begin":92,"end":92,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":258,"original_end":258},{"begin":93,"end":93,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":259,"original_end":259},{"begin":94,"end":95,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with APOBEC3G.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":260,"original_end":261},{"begin":96,"end":97,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and abolishes Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":262,"original_end":263},{"begin":98,"end":98,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":264,"original_end":264},{"begin":99,"end":99,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Impaired interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":265,"original_end":265},{"begin":103,"end":103,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":269,"original_end":269},{"begin":114,"end":114,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with Q-96.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":280,"original_end":280},{"begin":117,"end":117,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with S-99.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":283,"original_end":283},{"begin":123,"end":123,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein. Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":289,"original_end":289},{"begin":124,"end":124,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":290,"original_end":290},{"begin":127,"end":127,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":293,"original_end":293},{"begin":128,"end":128,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif, reduces Vif binding and abolishes incorporation into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":294,"original_end":294},{"begin":136,"end":136,"feature_id":"monomer_feature_4","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":136,"original_end":136},{"begin":144,"end":144,"feature_id":"monomer_feature_5","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":144,"original_end":144},{"begin":148,"end":148,"feature_id":"monomer_feature_6","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":148,"original_end":148},{"begin":149,"end":149,"feature_id":"monomer_feature_7","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":149,"original_end":149},{"begin":158,"end":158,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":324,"original_end":324},{"begin":158,"end":158,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":324,"original_end":324},{"begin":181,"end":181,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":347,"original_end":347},{"begin":189,"end":189,"feature_id":"monomer_feature_8","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":189,"original_end":189},{"begin":192,"end":192,"feature_id":"monomer_feature_9","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":192,"original_end":192},{"begin":197,"end":197,"feature_id":"monomer_feature_10","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":197,"original_end":197}]},{"key":"other_artifact","label":"ARTIFACT","kind":"range","features":[{"begin":1,"end":18,"feature_id":"range_feature_1","type":"ARTIFACT","name":"initiating methionine,expression tag","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":1,"original_end":18}]},{"key":"other_domain","label":"DOMAIN","kind":"range","features":[{"begin":19,"end":155,"feature_id":null,"type":"DOMAIN","name":null,"description":"CMP/dCMP-type deaminase 2","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":321}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"point","features":[{"begin":65,"end":65,"feature_id":"VAR_018148","type":"SEQUENCE_VARIANT","name":null,"description":"In dbSNP:rs2076101.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":231,"original_end":231},{"begin":141,"end":141,"feature_id":"VAR_025059","type":"SEQUENCE_VARIANT","name":null,"description":"In dbSNP:rs12157816.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":307,"original_end":307}]},{"key":"other_splice_variant","label":"SPLICE_VARIANT","kind":"range","features":[{"begin":19,"end":207,"feature_id":"VSP_042755","type":"SPLICE_VARIANT","name":null,"description":"In isoform 3.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373},{"begin":19,"end":207,"feature_id":"VSP_009804","type":"SPLICE_VARIANT","name":null,"description":"In isoform 2.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":1,"end":23,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":1,"original_end":23},{"begin":75,"end":81,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.J","provenance_source":"PDB","original_begin":75,"original_end":81}]}]},{"instance_id":"6NIL.G","entity_id":"1","label_asym_id":"G","auth_asym_id":"G","description":"DNA dC->dU-editing enzyme APOBEC-3F","polymer_type":"polypeptide(L)","sequence":{"value":"MGSSHHHHHHSQDPNSMGKEILRNPMEAMDPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETGRHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIKTARLYYFKDTDAAEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWDGLDYNFLDLDSKLQEILE","length":207},"alignments":[{"source":"UNIPROT","target_id":"Q8IUX4","target_sequence":"MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE","query_coverage":0.9130434782608695,"query_length":207,"target_coverage":0.5067024128686327,"target_length":373,"orientation":null,"regions":[{"query_begin":19,"query_end":207,"target_begin":185,"target_end":373,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":30,"end":38,"feature_id":"HELX_P31","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":30,"original_end":38},{"begin":52,"end":60,"feature_id":"AB2","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":52,"original_end":60},{"begin":68,"end":72,"feature_id":"AB2","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":68,"original_end":72},{"begin":83,"end":93,"feature_id":"HELX_P32","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":83,"original_end":93},{"begin":101,"end":104,"feature_id":"AB2","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":101,"original_end":104},{"begin":117,"end":128,"feature_id":"HELX_P33","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":117,"original_end":128},{"begin":136,"end":137,"feature_id":"AB3","type":"SHEET","name":"sheet","description":"parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":136,"original_end":137},{"begin":145,"end":155,"feature_id":"HELX_P34","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":145,"original_end":155},{"begin":156,"end":159,"feature_id":"HELX_P35","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":156,"original_end":159},{"begin":163,"end":164,"feature_id":"AB3","type":"SHEET","name":"sheet","description":"parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":163,"original_end":164},{"begin":166,"end":178,"feature_id":"HELX_P36","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":166,"original_end":178},{"begin":190,"end":204,"feature_id":"HELX_P37","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PROMOTIF","original_begin":190,"original_end":204}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":30,"end":30,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":30,"original_end":null,"values":[1.0]},{"begin":96,"end":96,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":96,"original_end":null,"values":[2.0]},{"begin":103,"end":103,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":103,"original_end":null,"values":[1.0]},{"begin":114,"end":115,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":114,"original_end":null,"values":[1.0,1.0]},{"begin":131,"end":131,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":131,"original_end":null,"values":[1.0]},{"begin":150,"end":150,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":150,"original_end":null,"values":[1.0]},{"begin":153,"end":153,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":153,"original_end":null,"values":[1.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":24,"end":74,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":24,"original_end":null,"values":[0.561,0.49,0.487,0.429,0.586,0.424,0.089,0.489,0.403,0.385,0.455,0.512,0.286,0.489,0.532,0.316,0.445,0.396,0.355,0.169,0.346,0.287,0.191,-0.016,0.275,0.32,0.459,0.457,0.495,0.502,0.459,0.455,0.453,0.5,0.47,0.497,0.463,0.399,0.317,0.487,0.427,0.467,0.479,0.439,0.554,0.475,0.482,0.449,0.536,0.472,0.573]},{"begin":82,"end":207,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":82,"original_end":null,"values":[0.394,0.377,0.455,0.427,0.442,0.44,0.438,0.472,0.393,0.486,0.444,0.56,0.362,0.355,0.436,0.485,0.428,0.527,0.415,0.443,0.483,0.526,0.532,0.459,0.527,0.533,0.485,0.454,0.364,0.402,0.467,0.563,0.42,0.261,0.365,0.39,0.397,0.249,0.362,0.437,0.414,0.039,0.403,0.283,0.37,0.521,0.5,0.366,0.368,0.461,0.409,0.443,0.46,0.406,0.532,0.412,0.479,0.416,0.46,0.4,0.21,0.244,0.404,0.34,0.255,0.416,0.289,-0.022,0.128,0.142,0.489,0.143,0.22,0.351,0.408,0.213,0.221,0.448,0.489,0.493,0.475,0.367,0.366,0.351,0.442,0.415,0.389,0.305,0.403,0.46,0.436,0.419,0.471,0.381,0.449,0.433,0.328,0.557,0.392,0.317,0.451,0.324,0.377,0.317,0.16,0.497,0.448,0.314,0.279,0.404,0.345,0.296,0.414,0.437,0.413,0.248,0.206,0.485,0.394,0.465,0.268,0.361,0.187,0.232,0.329,0.283]}]},{"key":"binding_site_zn","label":"BINDING SITE ZN","kind":"point","features":[{"begin":83,"end":83,"feature_id":"LIGAND_INTERACTION_3","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance O","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":83,"original_end":83},{"begin":85,"end":85,"feature_id":"LIGAND_INTERACTION_3","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance O","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":85,"original_end":85},{"begin":114,"end":114,"feature_id":"LIGAND_INTERACTION_3","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance O","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":114,"original_end":114},{"begin":117,"end":117,"feature_id":"LIGAND_INTERACTION_3","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance O","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":117,"original_end":117}]},{"key":"metal_coordination_zn","label":"METAL COORDINATION ZN","kind":"point","features":[{"begin":114,"end":114,"feature_id":"LIGAND_METAL_COORDINATION_LINKAGE_3","type":"LIGAND_METAL_COORDINATION_LINKAGE","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance O","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":114,"original_end":114},{"begin":117,"end":117,"feature_id":"LIGAND_METAL_COORDINATION_LINKAGE_3","type":"LIGAND_METAL_COORDINATION_LINKAGE","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance O","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":117,"original_end":117}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":24,"end":74,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":24,"original_end":null,"values":[0,0,0,0,0,4.56,0,0,0,0,0.25,0,0,0,1.52,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.75,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26,0,2.06,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":203,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-1.79,-2.36,-2.4,-2.7,-3.0,-2.82,-2.86,-2.59,-2.02,-1.71,-1.79,-2.09,-1.2,-0.39,-0.71,-0.71,-0.8,-0.8,-1.14,-0.51,0.09,-0.8,-1.4,-1.26,-0.37,0.12,-0.23,0.47,-0.09,0.01,-0.03,-0.24,0.53,-0.47,-1.21,-0.87,-1.32,-1.01,-1.82,-1.78,-1.78,-2.29,-1.89,-1.03,-0.96,-0.5,-0.53,0.18,0.18,1.03,1.59,1.26,0.48,-0.16,-0.56,-0.66,-0.4,-0.1,-0.67,-1.57,-1.63,-1.32,-0.5,-0.1,-0.42,-1.28,-1.58,-1.01,-0.97,-0.64,-0.99,-1.53,-1.89,-1.89,-1.86,-1.27,-2.12,-2.23,-1.78,-1.08,-0.58,-0.62,-0.22,0.44,0.52,0.52,0.63,0.86,0.97,0.46,0.37,0.08,-0.31,-0.98,-0.73,-0.73,-0.77,-1.27,-1.28,-1.24,-0.93,-0.94,-0.66,-0.6,-0.39,-0.58,-0.68,-0.97,-0.54,-0.27,-0.22,-0.51,0.04,0.42,-0.24,0.24,1.06,0.98,0.28,-0.03,0.27,-0.59,-0.32,-0.32,-0.21,-0.71,-0.41,-0.34,-0.07,0.22,0.11,0.07,0.31,-0.26,0.13,-0.8,-0.76,-0.76,-1.34,-0.64,-0.87,-1.11,-1.01,-0.9,-0.97,-0.67,-0.17,0.13,-0.46,-1.04,-0.7,-0.46,-0.97,0.0,-0.3,-0.22,0.08,0.42,0.67,0.28,-0.31,0.09,-0.81,-0.57,-0.79,-1.1,-1.44,-1.69,-0.94,-0.09,-0.54,-0.5,-0.74,-1.41,-1.7,-1.49,-0.79,-1.53,-2.18,-2.13,-2.13,-1.79,-0.98,-0.98,-0.94,-1.64,-0.9,-0.3,-0.59,0.22,-0.12,-0.63,-0.68,-0.11,-0.11,-0.81,-0.73,0.08,-0.73]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":207,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.99,0.99,0.98,0.98,0.97,0.96,0.92,0.9,0.89,0.86,0.79,0.75,0.75,0.74,0.75,0.71,0.71,0.68,0.64,0.63,0.64,0.63,0.53,0.45,0.34,0.25,0.24,0.19,0.19,0.17,0.11,0.13,0.18,0.15,0.09,0.08,0.09,0.09,0.1,0.12,0.07,0.04,0.03,0.02,0.03,0.04,0.07,0.05,0.06,0.06,0.06,0.09,0.09,0.1,0.08,0.14,0.08,0.09,0.07,0.08,0.06,0.06,0.09,0.13,0.21,0.16,0.2,0.22,0.28,0.34,0.34,0.33,0.31,0.29,0.28,0.31,0.24,0.26,0.2,0.21,0.15,0.13,0.11,0.13,0.13,0.1,0.1,0.1,0.1,0.09,0.09,0.08,0.05,0.07,0.05,0.05,0.04,0.03,0.05,0.08,0.05,0.07,0.13,0.15,0.15,0.16,0.12,0.13,0.13,0.13,0.09,0.08,0.09,0.09,0.06,0.07,0.06,0.09,0.13,0.13,0.1,0.14,0.1,0.09,0.11,0.09,0.09,0.13,0.15,0.1,0.06,0.06,0.04,0.04,0.06,0.09,0.11,0.1,0.09,0.1,0.09,0.09,0.08,0.12,0.07,0.11,0.12,0.13,0.15,0.13,0.18,0.19,0.27,0.29,0.25,0.24,0.17,0.16,0.2,0.16,0.14,0.1,0.1,0.06,0.07,0.12,0.07,0.05,0.03,0.03,0.04,0.04,0.07,0.08,0.07,0.08,0.1,0.08,0.1,0.09,0.09,0.1,0.1,0.14,0.15,0.09,0.09,0.09,0.14,0.2,0.18,0.11,0.11,0.12,0.06,0.07,0.1,0.1,0.21,0.24,0.29,0.41,0.45,0.57,0.61,0.73,0.84]}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":207,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.56,0.54,0.53,0.51,0.5,0.48,0.47,0.46,0.45,0.44,0.43,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.4,0.41,0.4,0.38,0.37,0.35,0.33,0.31,0.3,0.29,0.29,0.3,0.3,0.31,0.33,0.35,0.37,0.4,0.43,0.41,0.39,0.38,0.37,0.35,0.32,0.31,0.29,0.28,0.27,0.26,0.25,0.23,0.22,0.21,0.21,0.2,0.2,0.2,0.2,0.2,0.19,0.19,0.2,0.19,0.17,0.16,0.16,0.15,0.13,0.12,0.11,0.11,0.11,0.11,0.11,0.11,0.11,0.12,0.13,0.16,0.19,0.21,0.23,0.22,0.22,0.23,0.24,0.25,0.25,0.24,0.23,0.22,0.22,0.23,0.24,0.26,0.26,0.25,0.24,0.21,0.19,0.18,0.17,0.14,0.12,0.11,0.11,0.11,0.11,0.12,0.13,0.15,0.17,0.17,0.19,0.2,0.2,0.19,0.18,0.17,0.16,0.15,0.16,0.16,0.17,0.18,0.19,0.19,0.21,0.23,0.25,0.27,0.28,0.29,0.29,0.27,0.27,0.26,0.26,0.25,0.24,0.23,0.21,0.2,0.19,0.19,0.2,0.19,0.2,0.19,0.19,0.19,0.19,0.2,0.2,0.21,0.21,0.21,0.21,0.21,0.22,0.23,0.23,0.25,0.26,0.27,0.28,0.28,0.29,0.3,0.31,0.32,0.32,0.33,0.33,0.33,0.32,0.31,0.32,0.33,0.33,0.32,0.31,0.29,0.27,0.25,0.25,0.24,0.23,0.22,0.2,0.18,0.18,0.19,0.19,0.19,0.2,0.19,0.19]}]},{"key":"pfam","label":"PFAM","kind":"range","features":[{"begin":34,"end":204,"feature_id":"PF08210","type":"PFAM","name":"Activation-induced cytidine deaminase (AID) (AID)","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"Pfam","original_begin":34,"original_end":204}]},{"key":"scop","label":"SCOP","kind":"range","features":[{"begin":24,"end":207,"feature_id":"8105527","type":"SCOP_2_B_SUPERFAMILY","name":"Cytidine deaminase-like","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"SCOP2B","original_begin":24,"original_end":207}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":24,"end":186,"feature_id":"e6nilG1","type":"ECOD","name":"Parvo_coat","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"ECOD","original_begin":24,"original_end":186}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":19,"end":207,"feature_id":"PRO_0000171757","type":"CHAIN","name":null,"description":"DNA dC->dU-editing enzyme APOBEC-3F","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373},{"begin":68,"end":68,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":234,"original_end":234},{"begin":168,"end":168,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":334,"original_end":334},{"begin":186,"end":186,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":352,"original_end":352},{"begin":189,"end":189,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":355,"original_end":355},{"begin":192,"end":192,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":358,"original_end":358}]},{"key":"active_site","label":"ACTIVE SITE","kind":"point","features":[{"begin":85,"end":85,"feature_id":null,"type":"ACTIVE_SITE","name":null,"description":"Proton donor","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":30,"end":30,"feature_id":"monomer_feature_1","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":30,"original_end":30},{"begin":81,"end":81,"feature_id":"monomer_feature_2","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":81,"original_end":81},{"begin":82,"end":82,"feature_id":"monomer_feature_3","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":82,"original_end":82},{"begin":83,"end":83,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":249,"original_end":249},{"begin":83,"end":83,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Nearly abolished antiviral activity; when associated with R-65.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":249,"original_end":249},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with Q-67.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Decrease in cytidine deaminase and antiviral activity.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Decrease in cytidine deaminase and antiviral activity; when associated with A-67.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Remains able to bind Vif.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":89,"end":89,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":255,"original_end":255},{"begin":92,"end":92,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":258,"original_end":258},{"begin":93,"end":93,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":259,"original_end":259},{"begin":94,"end":95,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with APOBEC3G.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":260,"original_end":261},{"begin":96,"end":97,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and abolishes Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":262,"original_end":263},{"begin":98,"end":98,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":264,"original_end":264},{"begin":99,"end":99,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Impaired interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":265,"original_end":265},{"begin":103,"end":103,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":269,"original_end":269},{"begin":114,"end":114,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with Q-96.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":280,"original_end":280},{"begin":117,"end":117,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with S-99.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":283,"original_end":283},{"begin":123,"end":123,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein. Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":289,"original_end":289},{"begin":124,"end":124,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":290,"original_end":290},{"begin":127,"end":127,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":293,"original_end":293},{"begin":128,"end":128,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif, reduces Vif binding and abolishes incorporation into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":294,"original_end":294},{"begin":136,"end":136,"feature_id":"monomer_feature_4","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":136,"original_end":136},{"begin":144,"end":144,"feature_id":"monomer_feature_5","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":144,"original_end":144},{"begin":148,"end":148,"feature_id":"monomer_feature_6","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":148,"original_end":148},{"begin":149,"end":149,"feature_id":"monomer_feature_7","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":149,"original_end":149},{"begin":158,"end":158,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":324,"original_end":324},{"begin":158,"end":158,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":324,"original_end":324},{"begin":181,"end":181,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":347,"original_end":347},{"begin":189,"end":189,"feature_id":"monomer_feature_8","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":189,"original_end":189},{"begin":192,"end":192,"feature_id":"monomer_feature_9","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":192,"original_end":192},{"begin":197,"end":197,"feature_id":"monomer_feature_10","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":197,"original_end":197}]},{"key":"other_artifact","label":"ARTIFACT","kind":"range","features":[{"begin":1,"end":18,"feature_id":"range_feature_1","type":"ARTIFACT","name":"initiating methionine,expression tag","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":1,"original_end":18}]},{"key":"other_domain","label":"DOMAIN","kind":"range","features":[{"begin":19,"end":155,"feature_id":null,"type":"DOMAIN","name":null,"description":"CMP/dCMP-type deaminase 2","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":321}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"point","features":[{"begin":65,"end":65,"feature_id":"VAR_018148","type":"SEQUENCE_VARIANT","name":null,"description":"In dbSNP:rs2076101.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":231,"original_end":231},{"begin":141,"end":141,"feature_id":"VAR_025059","type":"SEQUENCE_VARIANT","name":null,"description":"In dbSNP:rs12157816.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":307,"original_end":307}]},{"key":"other_splice_variant","label":"SPLICE_VARIANT","kind":"range","features":[{"begin":19,"end":207,"feature_id":"VSP_042755","type":"SPLICE_VARIANT","name":null,"description":"In isoform 3.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373},{"begin":19,"end":207,"feature_id":"VSP_009804","type":"SPLICE_VARIANT","name":null,"description":"In isoform 2.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":1,"end":23,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":1,"original_end":23},{"begin":75,"end":81,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.G","provenance_source":"PDB","original_begin":75,"original_end":81}]}]},{"instance_id":"6NIL.D","entity_id":"1","label_asym_id":"D","auth_asym_id":"D","description":"DNA dC->dU-editing enzyme APOBEC-3F","polymer_type":"polypeptide(L)","sequence":{"value":"MGSSHHHHHHSQDPNSMGKEILRNPMEAMDPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETGRHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIKTARLYYFKDTDAAEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWDGLDYNFLDLDSKLQEILE","length":207},"alignments":[{"source":"UNIPROT","target_id":"Q8IUX4","target_sequence":"MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE","query_coverage":0.9130434782608695,"query_length":207,"target_coverage":0.5067024128686327,"target_length":373,"orientation":null,"regions":[{"query_begin":19,"query_end":207,"target_begin":185,"target_end":373,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":30,"end":38,"feature_id":"HELX_P16","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":30,"original_end":38},{"begin":52,"end":60,"feature_id":"AA6","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":52,"original_end":60},{"begin":68,"end":72,"feature_id":"AA6","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":68,"original_end":72},{"begin":83,"end":93,"feature_id":"HELX_P17","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":83,"original_end":93},{"begin":101,"end":104,"feature_id":"AA6","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":101,"original_end":104},{"begin":117,"end":128,"feature_id":"HELX_P18","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":117,"original_end":128},{"begin":136,"end":137,"feature_id":"AA7","type":"SHEET","name":"sheet","description":"parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":136,"original_end":137},{"begin":145,"end":155,"feature_id":"HELX_P19","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":145,"original_end":155},{"begin":156,"end":159,"feature_id":"HELX_P20","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":156,"original_end":159},{"begin":163,"end":164,"feature_id":"AA7","type":"SHEET","name":"sheet","description":"parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":163,"original_end":164},{"begin":166,"end":178,"feature_id":"HELX_P21","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":166,"original_end":178},{"begin":190,"end":204,"feature_id":"HELX_P22","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PROMOTIF","original_begin":190,"original_end":204}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":30,"end":30,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":30,"original_end":null,"values":[1.0]},{"begin":96,"end":96,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":96,"original_end":null,"values":[2.0]},{"begin":103,"end":103,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":103,"original_end":null,"values":[1.0]},{"begin":114,"end":115,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":114,"original_end":null,"values":[1.0,1.0]},{"begin":131,"end":131,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":131,"original_end":null,"values":[1.0]},{"begin":150,"end":150,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":150,"original_end":null,"values":[1.0]},{"begin":153,"end":153,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":153,"original_end":null,"values":[1.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":24,"end":74,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":24,"original_end":null,"values":[0.549,0.502,0.494,0.406,0.594,0.432,0.064,0.493,0.403,0.378,0.444,0.528,0.28,0.506,0.517,0.324,0.459,0.436,0.398,0.2,0.342,0.283,0.191,-0.001,0.273,0.317,0.469,0.462,0.493,0.519,0.438,0.494,0.444,0.52,0.464,0.49,0.447,0.374,0.311,0.512,0.409,0.461,0.488,0.464,0.56,0.495,0.486,0.464,0.544,0.463,0.574]},{"begin":82,"end":207,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":82,"original_end":null,"values":[0.405,0.371,0.47,0.421,0.422,0.461,0.433,0.472,0.407,0.478,0.416,0.563,0.394,0.373,0.433,0.504,0.446,0.519,0.421,0.476,0.494,0.534,0.536,0.477,0.519,0.555,0.504,0.458,0.364,0.412,0.455,0.552,0.414,0.268,0.378,0.396,0.402,0.298,0.357,0.435,0.416,0.035,0.396,0.324,0.377,0.527,0.504,0.364,0.38,0.472,0.405,0.45,0.444,0.419,0.527,0.409,0.495,0.413,0.446,0.387,0.206,0.238,0.386,0.344,0.246,0.431,0.309,-0.0,0.122,0.135,0.521,0.122,0.208,0.342,0.413,0.183,0.181,0.444,0.497,0.491,0.423,0.368,0.377,0.336,0.43,0.457,0.388,0.307,0.403,0.472,0.437,0.418,0.484,0.363,0.444,0.396,0.355,0.521,0.396,0.326,0.407,0.335,0.377,0.313,0.162,0.49,0.438,0.325,0.342,0.362,0.346,0.314,0.418,0.437,0.401,0.273,0.212,0.485,0.4,0.461,0.24,0.371,0.198,0.255,0.316,0.277]}]},{"key":"binding_site_zn","label":"BINDING SITE ZN","kind":"point","features":[{"begin":83,"end":83,"feature_id":"LIGAND_INTERACTION_2","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance N","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":83,"original_end":83},{"begin":85,"end":85,"feature_id":"LIGAND_INTERACTION_2","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance N","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":85,"original_end":85},{"begin":114,"end":114,"feature_id":"LIGAND_INTERACTION_2","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance N","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":114,"original_end":114},{"begin":117,"end":117,"feature_id":"LIGAND_INTERACTION_2","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance N","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":117,"original_end":117}]},{"key":"metal_coordination_zn","label":"METAL COORDINATION ZN","kind":"point","features":[{"begin":114,"end":114,"feature_id":"LIGAND_METAL_COORDINATION_LINKAGE_2","type":"LIGAND_METAL_COORDINATION_LINKAGE","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance N","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":114,"original_end":114},{"begin":117,"end":117,"feature_id":"LIGAND_METAL_COORDINATION_LINKAGE_2","type":"LIGAND_METAL_COORDINATION_LINKAGE","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance N","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":117,"original_end":117}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":24,"end":74,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":24,"original_end":null,"values":[0,0,0,0,0,4.83,0,0,0,0,0.19,0,0,0,1.5,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":203,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-1.79,-2.36,-2.4,-2.7,-3.0,-2.82,-2.86,-2.59,-2.02,-1.71,-1.79,-2.09,-1.2,-0.39,-0.71,-0.71,-0.8,-0.8,-1.14,-0.51,0.09,-0.8,-1.4,-1.26,-0.37,0.12,-0.23,0.47,-0.09,0.01,-0.03,-0.24,0.53,-0.47,-1.21,-0.87,-1.32,-1.01,-1.82,-1.78,-1.78,-2.29,-1.89,-1.03,-0.96,-0.5,-0.53,0.18,0.18,1.03,1.59,1.26,0.48,-0.16,-0.56,-0.66,-0.4,-0.1,-0.67,-1.57,-1.63,-1.32,-0.5,-0.1,-0.42,-1.28,-1.58,-1.01,-0.97,-0.64,-0.99,-1.53,-1.89,-1.89,-1.86,-1.27,-2.12,-2.23,-1.78,-1.08,-0.58,-0.62,-0.22,0.44,0.52,0.52,0.63,0.86,0.97,0.46,0.37,0.08,-0.31,-0.98,-0.73,-0.73,-0.77,-1.27,-1.28,-1.24,-0.93,-0.94,-0.66,-0.6,-0.39,-0.58,-0.68,-0.97,-0.54,-0.27,-0.22,-0.51,0.04,0.42,-0.24,0.24,1.06,0.98,0.28,-0.03,0.27,-0.59,-0.32,-0.32,-0.21,-0.71,-0.41,-0.34,-0.07,0.22,0.11,0.07,0.31,-0.26,0.13,-0.8,-0.76,-0.76,-1.34,-0.64,-0.87,-1.11,-1.01,-0.9,-0.97,-0.67,-0.17,0.13,-0.46,-1.04,-0.7,-0.46,-0.97,0.0,-0.3,-0.22,0.08,0.42,0.67,0.28,-0.31,0.09,-0.81,-0.57,-0.79,-1.1,-1.44,-1.69,-0.94,-0.09,-0.54,-0.5,-0.74,-1.41,-1.7,-1.49,-0.79,-1.53,-2.18,-2.13,-2.13,-1.79,-0.98,-0.98,-0.94,-1.64,-0.9,-0.3,-0.59,0.22,-0.12,-0.63,-0.68,-0.11,-0.11,-0.81,-0.73,0.08,-0.73]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":207,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.99,0.99,0.98,0.98,0.97,0.96,0.92,0.9,0.89,0.86,0.79,0.75,0.75,0.74,0.75,0.71,0.71,0.68,0.64,0.63,0.64,0.63,0.53,0.45,0.34,0.25,0.24,0.19,0.19,0.17,0.11,0.13,0.18,0.15,0.09,0.08,0.09,0.09,0.1,0.12,0.07,0.04,0.03,0.02,0.03,0.04,0.07,0.05,0.06,0.06,0.06,0.09,0.09,0.1,0.08,0.14,0.08,0.09,0.07,0.08,0.06,0.06,0.09,0.13,0.21,0.16,0.2,0.22,0.28,0.34,0.34,0.33,0.31,0.29,0.28,0.31,0.24,0.26,0.2,0.21,0.15,0.13,0.11,0.13,0.13,0.1,0.1,0.1,0.1,0.09,0.09,0.08,0.05,0.07,0.05,0.05,0.04,0.03,0.05,0.08,0.05,0.07,0.13,0.15,0.15,0.16,0.12,0.13,0.13,0.13,0.09,0.08,0.09,0.09,0.06,0.07,0.06,0.09,0.13,0.13,0.1,0.14,0.1,0.09,0.11,0.09,0.09,0.13,0.15,0.1,0.06,0.06,0.04,0.04,0.06,0.09,0.11,0.1,0.09,0.1,0.09,0.09,0.08,0.12,0.07,0.11,0.12,0.13,0.15,0.13,0.18,0.19,0.27,0.29,0.25,0.24,0.17,0.16,0.2,0.16,0.14,0.1,0.1,0.06,0.07,0.12,0.07,0.05,0.03,0.03,0.04,0.04,0.07,0.08,0.07,0.08,0.1,0.08,0.1,0.09,0.09,0.1,0.1,0.14,0.15,0.09,0.09,0.09,0.14,0.2,0.18,0.11,0.11,0.12,0.06,0.07,0.1,0.1,0.21,0.24,0.29,0.41,0.45,0.57,0.61,0.73,0.84]}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":207,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.56,0.54,0.53,0.51,0.5,0.48,0.47,0.46,0.45,0.44,0.43,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.4,0.41,0.4,0.38,0.37,0.35,0.33,0.31,0.3,0.29,0.29,0.3,0.3,0.31,0.33,0.35,0.37,0.4,0.43,0.41,0.39,0.38,0.37,0.35,0.32,0.31,0.29,0.28,0.27,0.26,0.25,0.23,0.22,0.21,0.21,0.2,0.2,0.2,0.2,0.2,0.19,0.19,0.2,0.19,0.17,0.16,0.16,0.15,0.13,0.12,0.11,0.11,0.11,0.11,0.11,0.11,0.11,0.12,0.13,0.16,0.19,0.21,0.23,0.22,0.22,0.23,0.24,0.25,0.25,0.24,0.23,0.22,0.22,0.23,0.24,0.26,0.26,0.25,0.24,0.21,0.19,0.18,0.17,0.14,0.12,0.11,0.11,0.11,0.11,0.12,0.13,0.15,0.17,0.17,0.19,0.2,0.2,0.19,0.18,0.17,0.16,0.15,0.16,0.16,0.17,0.18,0.19,0.19,0.21,0.23,0.25,0.27,0.28,0.29,0.29,0.27,0.27,0.26,0.26,0.25,0.24,0.23,0.21,0.2,0.19,0.19,0.2,0.19,0.2,0.19,0.19,0.19,0.19,0.2,0.2,0.21,0.21,0.21,0.21,0.21,0.22,0.23,0.23,0.25,0.26,0.27,0.28,0.28,0.29,0.3,0.31,0.32,0.32,0.33,0.33,0.33,0.32,0.31,0.32,0.33,0.33,0.32,0.31,0.29,0.27,0.25,0.25,0.24,0.23,0.22,0.2,0.18,0.18,0.19,0.19,0.19,0.2,0.19,0.19]}]},{"key":"pfam","label":"PFAM","kind":"range","features":[{"begin":34,"end":204,"feature_id":"PF08210","type":"PFAM","name":"Activation-induced cytidine deaminase (AID) (AID)","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"Pfam","original_begin":34,"original_end":204}]},{"key":"scop","label":"SCOP","kind":"range","features":[{"begin":24,"end":207,"feature_id":"8105527","type":"SCOP_2_B_SUPERFAMILY","name":"Cytidine deaminase-like","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"SCOP2B","original_begin":24,"original_end":207}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":24,"end":186,"feature_id":"e6nilD1","type":"ECOD","name":"Parvo_coat","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"ECOD","original_begin":24,"original_end":186}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":19,"end":207,"feature_id":"PRO_0000171757","type":"CHAIN","name":null,"description":"DNA dC->dU-editing enzyme APOBEC-3F","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373},{"begin":68,"end":68,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":234,"original_end":234},{"begin":168,"end":168,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":334,"original_end":334},{"begin":186,"end":186,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":352,"original_end":352},{"begin":189,"end":189,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":355,"original_end":355},{"begin":192,"end":192,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":358,"original_end":358}]},{"key":"active_site","label":"ACTIVE SITE","kind":"point","features":[{"begin":85,"end":85,"feature_id":null,"type":"ACTIVE_SITE","name":null,"description":"Proton donor","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":30,"end":30,"feature_id":"monomer_feature_1","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":30,"original_end":30},{"begin":81,"end":81,"feature_id":"monomer_feature_2","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":81,"original_end":81},{"begin":82,"end":82,"feature_id":"monomer_feature_3","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":82,"original_end":82},{"begin":83,"end":83,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":249,"original_end":249},{"begin":83,"end":83,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Nearly abolished antiviral activity; when associated with R-65.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":249,"original_end":249},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with Q-67.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Decrease in cytidine deaminase and antiviral activity.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Decrease in cytidine deaminase and antiviral activity; when associated with A-67.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Remains able to bind Vif.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":89,"end":89,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":255,"original_end":255},{"begin":92,"end":92,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":258,"original_end":258},{"begin":93,"end":93,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":259,"original_end":259},{"begin":94,"end":95,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with APOBEC3G.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":260,"original_end":261},{"begin":96,"end":97,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and abolishes Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":262,"original_end":263},{"begin":98,"end":98,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":264,"original_end":264},{"begin":99,"end":99,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Impaired interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":265,"original_end":265},{"begin":103,"end":103,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":269,"original_end":269},{"begin":114,"end":114,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with Q-96.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":280,"original_end":280},{"begin":117,"end":117,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with S-99.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":283,"original_end":283},{"begin":123,"end":123,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein. Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":289,"original_end":289},{"begin":124,"end":124,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":290,"original_end":290},{"begin":127,"end":127,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":293,"original_end":293},{"begin":128,"end":128,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif, reduces Vif binding and abolishes incorporation into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":294,"original_end":294},{"begin":136,"end":136,"feature_id":"monomer_feature_4","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":136,"original_end":136},{"begin":144,"end":144,"feature_id":"monomer_feature_5","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":144,"original_end":144},{"begin":148,"end":148,"feature_id":"monomer_feature_6","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":148,"original_end":148},{"begin":149,"end":149,"feature_id":"monomer_feature_7","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":149,"original_end":149},{"begin":158,"end":158,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":324,"original_end":324},{"begin":158,"end":158,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":324,"original_end":324},{"begin":181,"end":181,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":347,"original_end":347},{"begin":189,"end":189,"feature_id":"monomer_feature_8","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":189,"original_end":189},{"begin":192,"end":192,"feature_id":"monomer_feature_9","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":192,"original_end":192},{"begin":197,"end":197,"feature_id":"monomer_feature_10","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":197,"original_end":197}]},{"key":"other_artifact","label":"ARTIFACT","kind":"range","features":[{"begin":1,"end":18,"feature_id":"range_feature_1","type":"ARTIFACT","name":"initiating methionine,expression tag","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":1,"original_end":18}]},{"key":"other_domain","label":"DOMAIN","kind":"range","features":[{"begin":19,"end":155,"feature_id":null,"type":"DOMAIN","name":null,"description":"CMP/dCMP-type deaminase 2","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":321}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"point","features":[{"begin":65,"end":65,"feature_id":"VAR_018148","type":"SEQUENCE_VARIANT","name":null,"description":"In dbSNP:rs2076101.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":231,"original_end":231},{"begin":141,"end":141,"feature_id":"VAR_025059","type":"SEQUENCE_VARIANT","name":null,"description":"In dbSNP:rs12157816.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":307,"original_end":307}]},{"key":"other_splice_variant","label":"SPLICE_VARIANT","kind":"range","features":[{"begin":19,"end":207,"feature_id":"VSP_042755","type":"SPLICE_VARIANT","name":null,"description":"In isoform 3.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373},{"begin":19,"end":207,"feature_id":"VSP_009804","type":"SPLICE_VARIANT","name":null,"description":"In isoform 2.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":1,"end":23,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":1,"original_end":23},{"begin":75,"end":81,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.D","provenance_source":"PDB","original_begin":75,"original_end":81}]}]},{"instance_id":"6NIL.A","entity_id":"1","label_asym_id":"A","auth_asym_id":"A","description":"DNA dC->dU-editing enzyme APOBEC-3F","polymer_type":"polypeptide(L)","sequence":{"value":"MGSSHHHHHHSQDPNSMGKEILRNPMEAMDPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETGRHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIKTARLYYFKDTDAAEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWDGLDYNFLDLDSKLQEILE","length":207},"alignments":[{"source":"UNIPROT","target_id":"Q8IUX4","target_sequence":"MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYSQPEHHAEMCFLSWFCGNQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISAARLYYYWERDYRRALCRLSQAGARVKIMDDEEFAYCWENFVYSEGQPFMPWYKFDDNYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPVSWKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLYYFWDTDYQEGLRSLSQEGASVEIMGYKDFKYCWENFVYNDDEPFKPWKGLKYNFLFLDSKLQEILE","query_coverage":0.9130434782608695,"query_length":207,"target_coverage":0.5067024128686327,"target_length":373,"orientation":null,"regions":[{"query_begin":19,"query_end":207,"target_begin":185,"target_end":373,"exon_shift":null}]}],"tracks":[{"key":"secondary_structure","label":"SECONDARY STRUCTURE","kind":"range","features":[{"begin":30,"end":38,"feature_id":"HELX_P1","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":30,"original_end":38},{"begin":52,"end":60,"feature_id":"AA1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":52,"original_end":60},{"begin":68,"end":72,"feature_id":"AA1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":68,"original_end":72},{"begin":83,"end":93,"feature_id":"HELX_P2","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":83,"original_end":93},{"begin":101,"end":104,"feature_id":"AA1","type":"SHEET","name":"sheet","description":"anti-parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":101,"original_end":104},{"begin":117,"end":128,"feature_id":"HELX_P3","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":117,"original_end":128},{"begin":136,"end":137,"feature_id":"AA2","type":"SHEET","name":"sheet","description":"parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":136,"original_end":137},{"begin":145,"end":155,"feature_id":"HELX_P4","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":145,"original_end":155},{"begin":156,"end":159,"feature_id":"HELX_P5","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":156,"original_end":159},{"begin":163,"end":164,"feature_id":"AA2","type":"SHEET","name":"sheet","description":"parallel sense sheet","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":163,"original_end":164},{"begin":166,"end":178,"feature_id":"HELX_P6","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":166,"original_end":178},{"begin":190,"end":204,"feature_id":"HELX_P7","type":"HELIX_P","name":"helix","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PROMOTIF","original_begin":190,"original_end":204}]},{"key":"atomic_clashes","label":"ATOMIC CLASHES","kind":"numeric_series","features":[{"begin":30,"end":30,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":30,"original_end":null,"values":[1.0]},{"begin":103,"end":103,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":103,"original_end":null,"values":[1.0]},{"begin":114,"end":115,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":114,"original_end":null,"values":[1.0,1.0]},{"begin":131,"end":131,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":131,"original_end":null,"values":[1.0]},{"begin":150,"end":150,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":150,"original_end":null,"values":[1.0]},{"begin":153,"end":153,"feature_id":"CLASHES","type":"CLASHES","name":"CLASHES","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":153,"original_end":null,"values":[1.0]}]},{"key":"q_score","label":"Q-SCORE","kind":"numeric_series","features":[{"begin":24,"end":74,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":24,"original_end":null,"values":[0.55,0.506,0.474,0.416,0.574,0.436,0.088,0.461,0.416,0.388,0.444,0.502,0.265,0.519,0.517,0.326,0.451,0.419,0.382,0.155,0.325,0.274,0.174,-0.02,0.261,0.308,0.481,0.455,0.466,0.501,0.453,0.444,0.443,0.512,0.477,0.508,0.449,0.394,0.321,0.494,0.411,0.493,0.461,0.445,0.534,0.478,0.483,0.462,0.553,0.465,0.554]},{"begin":82,"end":207,"feature_id":"Q_SCORE","type":"Q_SCORE","name":"Q_SCORE","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":82,"original_end":null,"values":[0.406,0.37,0.47,0.465,0.435,0.455,0.441,0.505,0.398,0.484,0.444,0.564,0.38,0.361,0.401,0.503,0.435,0.515,0.433,0.45,0.5,0.545,0.539,0.465,0.521,0.55,0.473,0.482,0.356,0.397,0.454,0.548,0.416,0.266,0.353,0.37,0.439,0.229,0.38,0.437,0.423,0.037,0.401,0.279,0.432,0.513,0.496,0.38,0.38,0.475,0.393,0.445,0.462,0.406,0.522,0.426,0.489,0.421,0.443,0.381,0.19,0.244,0.42,0.369,0.293,0.396,0.248,-0.003,0.146,0.131,0.469,0.156,0.182,0.349,0.393,0.233,0.205,0.439,0.518,0.489,0.479,0.371,0.36,0.324,0.468,0.432,0.406,0.326,0.387,0.451,0.446,0.436,0.454,0.39,0.43,0.42,0.342,0.547,0.421,0.315,0.444,0.344,0.402,0.316,0.145,0.503,0.456,0.346,0.317,0.357,0.335,0.31,0.414,0.42,0.441,0.237,0.182,0.461,0.403,0.465,0.243,0.374,0.197,0.22,0.317,0.299]}]},{"key":"binding_site_zn","label":"BINDING SITE ZN","kind":"point","features":[{"begin":83,"end":83,"feature_id":"LIGAND_INTERACTION_1","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance M","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":83,"original_end":83},{"begin":85,"end":85,"feature_id":"LIGAND_INTERACTION_1","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance M","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":85,"original_end":85},{"begin":114,"end":114,"feature_id":"LIGAND_INTERACTION_1","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance M","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":114,"original_end":114},{"begin":117,"end":117,"feature_id":"LIGAND_INTERACTION_1","type":"LIGAND_INTERACTION","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance M","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":117,"original_end":117}]},{"key":"metal_coordination_zn","label":"METAL COORDINATION ZN","kind":"point","features":[{"begin":114,"end":114,"feature_id":"LIGAND_METAL_COORDINATION_LINKAGE_1","type":"LIGAND_METAL_COORDINATION_LINKAGE","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance M","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":114,"original_end":114},{"begin":117,"end":117,"feature_id":"LIGAND_METAL_COORDINATION_LINKAGE_1","type":"LIGAND_METAL_COORDINATION_LINKAGE","name":"ligand ZN","description":"Software generated binding site for ligand entity 4 component ZN instance M","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":117,"original_end":117}]},{"key":"buried_residues","label":"BURIED RESIDUES","kind":"point","features":[{"begin":24,"end":74,"feature_id":null,"type":"BURIED_RESIDUES","name":"Unbound chain core residues","description":"Residue accessibility lower than 6Å","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"NBDB derivation matching RCSB Saguaro App","original_begin":24,"original_end":null,"values":[0,0,0,0,0,4.56,0,0,0,0,0,0,0,0,1.45,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0,0,0.26,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26,0,2.02,0,0]}]},{"key":"hydropathy","label":"HYDROPATHY","kind":"numeric_series","features":[{"begin":5,"end":203,"feature_id":null,"type":"HYDROPATHY","name":"Hydropathy values","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"biojava-7.2.4","original_begin":5,"original_end":null,"values":[-1.79,-2.36,-2.4,-2.7,-3.0,-2.82,-2.86,-2.59,-2.02,-1.71,-1.79,-2.09,-1.2,-0.39,-0.71,-0.71,-0.8,-0.8,-1.14,-0.51,0.09,-0.8,-1.4,-1.26,-0.37,0.12,-0.23,0.47,-0.09,0.01,-0.03,-0.24,0.53,-0.47,-1.21,-0.87,-1.32,-1.01,-1.82,-1.78,-1.78,-2.29,-1.89,-1.03,-0.96,-0.5,-0.53,0.18,0.18,1.03,1.59,1.26,0.48,-0.16,-0.56,-0.66,-0.4,-0.1,-0.67,-1.57,-1.63,-1.32,-0.5,-0.1,-0.42,-1.28,-1.58,-1.01,-0.97,-0.64,-0.99,-1.53,-1.89,-1.89,-1.86,-1.27,-2.12,-2.23,-1.78,-1.08,-0.58,-0.62,-0.22,0.44,0.52,0.52,0.63,0.86,0.97,0.46,0.37,0.08,-0.31,-0.98,-0.73,-0.73,-0.77,-1.27,-1.28,-1.24,-0.93,-0.94,-0.66,-0.6,-0.39,-0.58,-0.68,-0.97,-0.54,-0.27,-0.22,-0.51,0.04,0.42,-0.24,0.24,1.06,0.98,0.28,-0.03,0.27,-0.59,-0.32,-0.32,-0.21,-0.71,-0.41,-0.34,-0.07,0.22,0.11,0.07,0.31,-0.26,0.13,-0.8,-0.76,-0.76,-1.34,-0.64,-0.87,-1.11,-1.01,-0.9,-0.97,-0.67,-0.17,0.13,-0.46,-1.04,-0.7,-0.46,-0.97,0.0,-0.3,-0.22,0.08,0.42,0.67,0.28,-0.31,0.09,-0.81,-0.57,-0.79,-1.1,-1.44,-1.69,-0.94,-0.09,-0.54,-0.5,-0.74,-1.41,-1.7,-1.49,-0.79,-1.53,-2.18,-2.13,-2.13,-1.79,-0.98,-0.98,-0.94,-1.64,-0.9,-0.3,-0.59,0.22,-0.12,-0.63,-0.68,-0.11,-0.11,-0.81,-0.73,0.08,-0.73]}]},{"key":"disorder","label":"DISORDER","kind":"numeric_series","features":[{"begin":1,"end":207,"feature_id":null,"type":"DISORDER","name":"Disordered regions","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"IUPred2(short)","original_begin":1,"original_end":null,"values":[0.99,0.99,0.98,0.98,0.97,0.96,0.92,0.9,0.89,0.86,0.79,0.75,0.75,0.74,0.75,0.71,0.71,0.68,0.64,0.63,0.64,0.63,0.53,0.45,0.34,0.25,0.24,0.19,0.19,0.17,0.11,0.13,0.18,0.15,0.09,0.08,0.09,0.09,0.1,0.12,0.07,0.04,0.03,0.02,0.03,0.04,0.07,0.05,0.06,0.06,0.06,0.09,0.09,0.1,0.08,0.14,0.08,0.09,0.07,0.08,0.06,0.06,0.09,0.13,0.21,0.16,0.2,0.22,0.28,0.34,0.34,0.33,0.31,0.29,0.28,0.31,0.24,0.26,0.2,0.21,0.15,0.13,0.11,0.13,0.13,0.1,0.1,0.1,0.1,0.09,0.09,0.08,0.05,0.07,0.05,0.05,0.04,0.03,0.05,0.08,0.05,0.07,0.13,0.15,0.15,0.16,0.12,0.13,0.13,0.13,0.09,0.08,0.09,0.09,0.06,0.07,0.06,0.09,0.13,0.13,0.1,0.14,0.1,0.09,0.11,0.09,0.09,0.13,0.15,0.1,0.06,0.06,0.04,0.04,0.06,0.09,0.11,0.1,0.09,0.1,0.09,0.09,0.08,0.12,0.07,0.11,0.12,0.13,0.15,0.13,0.18,0.19,0.27,0.29,0.25,0.24,0.17,0.16,0.2,0.16,0.14,0.1,0.1,0.06,0.07,0.12,0.07,0.05,0.03,0.03,0.04,0.04,0.07,0.08,0.07,0.08,0.1,0.08,0.1,0.09,0.09,0.1,0.1,0.14,0.15,0.09,0.09,0.09,0.14,0.2,0.18,0.11,0.11,0.12,0.06,0.07,0.1,0.1,0.21,0.24,0.29,0.41,0.45,0.57,0.61,0.73,0.84]}]},{"key":"disordered_binding","label":"DISORDERED BINDING","kind":"numeric_series","features":[{"begin":1,"end":207,"feature_id":null,"type":"DISORDER_BINDING","name":"Disordered binding sites","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"Anchor2","original_begin":1,"original_end":null,"values":[0.56,0.54,0.53,0.51,0.5,0.48,0.47,0.46,0.45,0.44,0.43,0.43,0.43,0.43,0.43,0.43,0.42,0.42,0.42,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.41,0.4,0.41,0.4,0.38,0.37,0.35,0.33,0.31,0.3,0.29,0.29,0.3,0.3,0.31,0.33,0.35,0.37,0.4,0.43,0.41,0.39,0.38,0.37,0.35,0.32,0.31,0.29,0.28,0.27,0.26,0.25,0.23,0.22,0.21,0.21,0.2,0.2,0.2,0.2,0.2,0.19,0.19,0.2,0.19,0.17,0.16,0.16,0.15,0.13,0.12,0.11,0.11,0.11,0.11,0.11,0.11,0.11,0.12,0.13,0.16,0.19,0.21,0.23,0.22,0.22,0.23,0.24,0.25,0.25,0.24,0.23,0.22,0.22,0.23,0.24,0.26,0.26,0.25,0.24,0.21,0.19,0.18,0.17,0.14,0.12,0.11,0.11,0.11,0.11,0.12,0.13,0.15,0.17,0.17,0.19,0.2,0.2,0.19,0.18,0.17,0.16,0.15,0.16,0.16,0.17,0.18,0.19,0.19,0.21,0.23,0.25,0.27,0.28,0.29,0.29,0.27,0.27,0.26,0.26,0.25,0.24,0.23,0.21,0.2,0.19,0.19,0.2,0.19,0.2,0.19,0.19,0.19,0.19,0.2,0.2,0.21,0.21,0.21,0.21,0.21,0.22,0.23,0.23,0.25,0.26,0.27,0.28,0.28,0.29,0.3,0.31,0.32,0.32,0.33,0.33,0.33,0.32,0.31,0.32,0.33,0.33,0.32,0.31,0.29,0.27,0.25,0.25,0.24,0.23,0.22,0.2,0.18,0.18,0.19,0.19,0.19,0.2,0.19,0.19]}]},{"key":"pfam","label":"PFAM","kind":"range","features":[{"begin":34,"end":204,"feature_id":"PF08210","type":"PFAM","name":"Activation-induced cytidine deaminase (AID) (AID)","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"Pfam","original_begin":34,"original_end":204}]},{"key":"scop","label":"SCOP","kind":"range","features":[{"begin":24,"end":207,"feature_id":"8105527","type":"SCOP_2_B_SUPERFAMILY","name":"Cytidine deaminase-like","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"SCOP2B","original_begin":24,"original_end":207}]},{"key":"ecod","label":"ECOD","kind":"range","features":[{"begin":24,"end":186,"feature_id":"e6nilA1","type":"ECOD","name":"Interfer-bind","description":null,"value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"ECOD","original_begin":24,"original_end":186}]},{"key":"molecule_processing","label":"MOLECULE PROCESSING","kind":"range","features":[{"begin":19,"end":207,"feature_id":"PRO_0000171757","type":"CHAIN","name":null,"description":"DNA dC->dU-editing enzyme APOBEC-3F","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373},{"begin":68,"end":68,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":234,"original_end":234},{"begin":168,"end":168,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":334,"original_end":334},{"begin":186,"end":186,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":352,"original_end":352},{"begin":189,"end":189,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":355,"original_end":355},{"begin":192,"end":192,"feature_id":null,"type":"CROSS_LINK","name":null,"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":358,"original_end":358}]},{"key":"active_site","label":"ACTIVE SITE","kind":"point","features":[{"begin":85,"end":85,"feature_id":null,"type":"ACTIVE_SITE","name":null,"description":"Proton donor","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251}]},{"key":"mutagenesis","label":"MUTAGENESIS","kind":"point","features":[{"begin":30,"end":30,"feature_id":"monomer_feature_1","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":30,"original_end":30},{"begin":81,"end":81,"feature_id":"monomer_feature_2","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":81,"original_end":81},{"begin":82,"end":82,"feature_id":"monomer_feature_3","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":82,"original_end":82},{"begin":83,"end":83,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":249,"original_end":249},{"begin":83,"end":83,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Nearly abolished antiviral activity; when associated with R-65.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":249,"original_end":249},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with Q-67.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Decrease in cytidine deaminase and antiviral activity.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Decrease in cytidine deaminase and antiviral activity; when associated with A-67.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":85,"end":85,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Remains able to bind Vif.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":251,"original_end":251},{"begin":89,"end":89,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":255,"original_end":255},{"begin":92,"end":92,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":258,"original_end":258},{"begin":93,"end":93,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":259,"original_end":259},{"begin":94,"end":95,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with APOBEC3G.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":260,"original_end":261},{"begin":96,"end":97,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and abolishes Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":262,"original_end":263},{"begin":98,"end":98,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":264,"original_end":264},{"begin":99,"end":99,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Impaired interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":265,"original_end":265},{"begin":103,"end":103,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":269,"original_end":269},{"begin":114,"end":114,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with Q-96.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":280,"original_end":280},{"begin":117,"end":117,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Reduced but not abolished antiviral activity. Nearly abolished antiviral activity; when associated with S-99.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":283,"original_end":283},{"begin":123,"end":123,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein. Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":289,"original_end":289},{"begin":124,"end":124,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding but is still efficiently incorporated into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":290,"original_end":290},{"begin":127,"end":127,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":293,"original_end":293},{"begin":128,"end":128,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif, reduces Vif binding and abolishes incorporation into the virion.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":294,"original_end":294},{"begin":136,"end":136,"feature_id":"monomer_feature_4","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":136,"original_end":136},{"begin":144,"end":144,"feature_id":"monomer_feature_5","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":144,"original_end":144},{"begin":148,"end":148,"feature_id":"monomer_feature_6","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":148,"original_end":148},{"begin":149,"end":149,"feature_id":"monomer_feature_7","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":149,"original_end":149},{"begin":158,"end":158,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Resistant to HIV-1 Vif and reduces Vif binding.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":324,"original_end":324},{"begin":158,"end":158,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Abolished interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":324,"original_end":324},{"begin":181,"end":181,"feature_id":null,"type":"MUTAGENESIS_SITE","name":null,"description":"Does not affect interaction with HIV-1 Vif protein.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":347,"original_end":347},{"begin":189,"end":189,"feature_id":"monomer_feature_8","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":189,"original_end":189},{"begin":192,"end":192,"feature_id":"monomer_feature_9","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":192,"original_end":192},{"begin":197,"end":197,"feature_id":"monomer_feature_10","type":"MUTATION","name":"engineered mutation","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":197,"original_end":197}]},{"key":"other_artifact","label":"ARTIFACT","kind":"range","features":[{"begin":1,"end":18,"feature_id":"range_feature_1","type":"ARTIFACT","name":"initiating methionine,expression tag","description":null,"value":null,"source":"PDB_ENTITY","source_id":"6NIL_1","provenance_source":"PDB","original_begin":1,"original_end":18}]},{"key":"other_domain","label":"DOMAIN","kind":"range","features":[{"begin":19,"end":155,"feature_id":null,"type":"DOMAIN","name":null,"description":"CMP/dCMP-type deaminase 2","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":321}]},{"key":"other_sequence_variant","label":"SEQUENCE_VARIANT","kind":"point","features":[{"begin":65,"end":65,"feature_id":"VAR_018148","type":"SEQUENCE_VARIANT","name":null,"description":"In dbSNP:rs2076101.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":231,"original_end":231},{"begin":141,"end":141,"feature_id":"VAR_025059","type":"SEQUENCE_VARIANT","name":null,"description":"In dbSNP:rs12157816.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":307,"original_end":307}]},{"key":"other_splice_variant","label":"SPLICE_VARIANT","kind":"range","features":[{"begin":19,"end":207,"feature_id":"VSP_042755","type":"SPLICE_VARIANT","name":null,"description":"In isoform 3.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373},{"begin":19,"end":207,"feature_id":"VSP_009804","type":"SPLICE_VARIANT","name":null,"description":"In isoform 2.","value":null,"source":"UNIPROT","source_id":"Q8IUX4","provenance_source":null,"original_begin":185,"original_end":373}]},{"key":"other_unobserved_residue_xyz","label":"UNOBSERVED_RESIDUE_XYZ","kind":"range","features":[{"begin":1,"end":23,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":1,"original_end":23},{"begin":75,"end":81,"feature_id":"1","type":"UNOBSERVED_RESIDUE_XYZ","name":"unmodeled residue","description":"No coordinates for this residue are reported in model 1","value":null,"source":"PDB_INSTANCE","source_id":"6NIL.A","provenance_source":"PDB","original_begin":75,"original_end":81}]}]}],"errors":[]}